Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009755A_C01 KMC009755A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567450.1| expressed protein; protein id: At4g14950.1 [Ara... 82 3e-15
gb|AAL24087.1| unknown protein [Arabidopsis thaliana] 82 6e-15
gb|AAM60984.1| unknown [Arabidopsis thaliana] 79 4e-14
pir||E86188 hypothetical protein [imported] - Arabidopsis thalia... 78 8e-14
ref|NP_563735.1| expressed protein; protein id: At1g05360.1, sup... 78 8e-14
>ref|NP_567450.1| expressed protein; protein id: At4g14950.1 [Arabidopsis thaliana]
Length = 416
Score = 82.4 bits (202), Expect = 3e-15
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -3
Query: 543 KKWDFSFASIWNTVVWLMLMNFFVKIVNATAQTYLKKXQERELAALT 403
KKWDFSFASIWN +VWLML+NFFVKIV ATAQ +LKK QE+E+A LT
Sbjct: 367 KKWDFSFASIWNGIVWLMLLNFFVKIVTATAQRHLKKKQEKEMATLT 413
>gb|AAL24087.1| unknown protein [Arabidopsis thaliana]
Length = 416
Score = 81.6 bits (200), Expect = 6e-15
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -3
Query: 543 KKWDFSFASIWNTVVWLMLMNFFVKIVNATAQTYLKKXQERELAALT 403
KKWDFSFASIWN +VWLML+NFFVKIV ATAQ +LKK QE+E+A LT
Sbjct: 367 KKWDFSFASIWNGMVWLMLLNFFVKIVTATAQRHLKKKQEKEMATLT 413
>gb|AAM60984.1| unknown [Arabidopsis thaliana]
Length = 416
Score = 79.0 bits (193), Expect = 4e-14
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = -3
Query: 543 KKWDFSFASIWNTVVWLMLMNFFVKIVNATAQTYLKKXQERELAALTKKFTTSDSDTQ 370
KKWD SFAS+WN VVWLML+NFF +IV +TAQ YLKK QE EL ALT K + S ++
Sbjct: 359 KKWDLSFASVWNGVVWLMLLNFFGQIVTSTAQRYLKKQQEEELDALTNKSSLSSKKSK 416
>pir||E86188 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388561|gb|AAB71442.1| Similar to Arabidopsis
hypothetical protein PID:e326839 (gb|Z97337).
[Arabidopsis thaliana]
Length = 430
Score = 77.8 bits (190), Expect = 8e-14
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -3
Query: 543 KKWDFSFASIWNTVVWLMLMNFFVKIVNATAQTYLKKXQERELAALTKK 397
KKWD SFAS+WN VVWLML+NFF +IV +TAQ YLKK QE EL ALT K
Sbjct: 373 KKWDLSFASVWNGVVWLMLLNFFGQIVTSTAQRYLKKQQEEELDALTNK 421
>ref|NP_563735.1| expressed protein; protein id: At1g05360.1, supported by cDNA:
107636. [Arabidopsis thaliana]
Length = 416
Score = 77.8 bits (190), Expect = 8e-14
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -3
Query: 543 KKWDFSFASIWNTVVWLMLMNFFVKIVNATAQTYLKKXQERELAALTKK 397
KKWD SFAS+WN VVWLML+NFF +IV +TAQ YLKK QE EL ALT K
Sbjct: 359 KKWDLSFASVWNGVVWLMLLNFFGQIVTSTAQRYLKKQQEEELDALTNK 407
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,480,890
Number of Sequences: 1393205
Number of extensions: 8686454
Number of successful extensions: 21082
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21073
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
