Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009749A_C01 KMC009749A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN41286.1| unknown protein [Arabidopsis thaliana] 79 5e-14
gb|AAK59659.1| unknown protein [Arabidopsis thaliana] 79 5e-14
ref|NP_343401.1| Hypothetical protein [Sulfolobus solfataricus] ... 32 8.8
>gb|AAN41286.1| unknown protein [Arabidopsis thaliana]
Length = 373
Score = 79.0 bits (193), Expect = 5e-14
Identities = 38/56 (67%), Positives = 45/56 (79%)
Frame = -3
Query: 622 DSVVDLRSPELSILVELLPLSRVPNGSLVVAVSALPRNLVSTKPRLCVKALTSNTK 455
DSVVDL+SPEL +LVELLPLSR+ +GS V AVS LP LVSTKP+LC+K L +K
Sbjct: 312 DSVVDLKSPELCVLVELLPLSRISSGSFVAAVSVLPHRLVSTKPKLCIKPLVPESK 367
>gb|AAK59659.1| unknown protein [Arabidopsis thaliana]
Length = 348
Score = 79.0 bits (193), Expect = 5e-14
Identities = 38/56 (67%), Positives = 45/56 (79%)
Frame = -3
Query: 622 DSVVDLRSPELSILVELLPLSRVPNGSLVVAVSALPRNLVSTKPRLCVKALTSNTK 455
DSVVDL+SPEL +LVELLPLSR+ +GS V AVS LP LVSTKP+LC+K L +K
Sbjct: 287 DSVVDLKSPELCVLVELLPLSRISSGSFVAAVSVLPHRLVSTKPKLCIKPLVPESK 342
>ref|NP_343401.1| Hypothetical protein [Sulfolobus solfataricus]
gi|25375760|pir||H90366 hypothetical protein SSO2002
[imported] - Sulfolobus solfataricus
gi|13815281|gb|AAK42191.1| Hypothetical protein
[Sulfolobus solfataricus]
Length = 345
Score = 31.6 bits (70), Expect = 8.8
Identities = 25/97 (25%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Frame = -1
Query: 504 LVQNLGSVLRP*LPILRKGLWLIEKDSAAVLFQFSSMLLV--VVDNVAFVRLELSGGFCI 331
L+QN+ ++ P GLW+ K ++V S++ + + D ++GGF I
Sbjct: 194 LIQNVNGIIPGIKPETAFGLWIARKVVSSVTNPNVSVMRIYTISDAAGQNPTTINGGFSI 253
Query: 330 SLRVEIE*RTIVQSLLNQLIRNSIPYIVLTLSNRYKV 220
L +E R ++ L + RN++ I + RY V
Sbjct: 254 DLTKLLEKRDLLSERLEAIARNALS-ISSNMRERYIV 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,570,594
Number of Sequences: 1393205
Number of extensions: 11406422
Number of successful extensions: 21048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21040
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
