Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009742A_C01 KMC009742A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB64719.1| AKIN beta2 [Arabidopsis thaliana] gi|13430672|gb... 187 1e-46
ref|NP_193369.1| kinase like protein; protein id: At4g16360.1 [A... 186 3e-46
gb|AAG41995.1|AF322108_1 SNF1-related kinase complex anchoring p... 179 3e-44
emb|CAB52141.1| GAL83 protein [Solanum tuberosum] 129 3e-29
ref|NP_197615.1| AKIN beta1; protein id: At5g21170.1, supported ... 116 2e-25
>emb|CAB64719.1| AKIN beta2 [Arabidopsis thaliana]
gi|13430672|gb|AAK25958.1|AF360248_1 putative kinase
[Arabidopsis thaliana]
Length = 289
Score = 187 bits (474), Expect = 1e-46
Identities = 91/118 (77%), Positives = 106/118 (89%), Gaps = 1/118 (0%)
Frame = -3
Query: 627 NAYNILDLQEYVPEDIGGISSFEPPKSPDSSYSNLQLGSEDYAKEPPLVPPFLQMTLLNV 448
N +NILDLQ+YVPEDI IS FEPP+SP++SYSNL LG+EDY+KEPP+VPP LQMTLLN+
Sbjct: 173 NTFNILDLQDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNL 232
Query: 447 PSANMET-QPLPSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFVAKYVTVVLYKSMQR 277
P+AN + PLP RPQHV+LNHLYMQKGKS PSVVALG+THRF+AKYVTVVLYKS+QR
Sbjct: 233 PAANPDIPSPLP-RPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
>ref|NP_193369.1| kinase like protein; protein id: At4g16360.1 [Arabidopsis thaliana]
gi|7485077|pir||C71430 hypothetical protein -
Arabidopsis thaliana gi|2244993|emb|CAB10413.1| kinase
like protein [Arabidopsis thaliana]
gi|7268385|emb|CAB78678.1| kinase like protein
[Arabidopsis thaliana]
Length = 259
Score = 186 bits (471), Expect = 3e-46
Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 1/118 (0%)
Frame = -3
Query: 627 NAYNILDLQEYVPEDIGGISSFEPPKSPDSSYSNLQLGSEDYAKEPPLVPPFLQMTLLNV 448
N +NILDLQ+YVPEDI IS F+PP+SP++SYSNL LG+EDY+KEPP+VPP LQMTLLN+
Sbjct: 143 NTFNILDLQDYVPEDIQSISGFDPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNL 202
Query: 447 PSANMET-QPLPSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFVAKYVTVVLYKSMQR 277
P+AN + PLP RPQHV+LNHLYMQKGKS PSVVALG+THRF+AKYVTVVLYKS+QR
Sbjct: 203 PAANPDIPSPLP-RPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259
>gb|AAG41995.1|AF322108_1 SNF1-related kinase complex anchoring protein SIP1 [Lycopersicon
esculentum]
Length = 227
Score = 179 bits (453), Expect = 3e-44
Identities = 86/117 (73%), Positives = 102/117 (86%)
Frame = -3
Query: 627 NAYNILDLQEYVPEDIGGISSFEPPKSPDSSYSNLQLGSEDYAKEPPLVPPFLQMTLLNV 448
N YN+LD+++YVPEDI I FEPP+SPDSSY+NL L SEDYAKEPP+VPP LQMTLLNV
Sbjct: 111 NTYNLLDMKDYVPEDIESIYGFEPPQSPDSSYNNLHLVSEDYAKEPPVVPPHLQMTLLNV 170
Query: 447 PSANMETQPLPSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFVAKYVTVVLYKSMQR 277
++ME P SRPQHVVLNHLYMQK +S+PSVVALG+T+RF++KYVTVVLYKS+QR
Sbjct: 171 SPSHMEIPPPLSRPQHVVLNHLYMQKDRSTPSVVALGSTNRFLSKYVTVVLYKSIQR 227
>emb|CAB52141.1| GAL83 protein [Solanum tuberosum]
Length = 289
Score = 129 bits (324), Expect = 3e-29
Identities = 64/115 (55%), Positives = 84/115 (72%)
Frame = -3
Query: 621 YNILDLQEYVPEDIGGISSFEPPKSPDSSYSNLQLGSEDYAKEPPLVPPFLQMTLLNVPS 442
+N+LD+ + VPE++ ++ FE P SPDSSY+ L ED+AKEP VPP L +T+L S
Sbjct: 177 FNLLDVNDNVPENLESVAEFEAPPSPDSSYAQALLVDEDFAKEPVAVPPQLHLTVLG--S 234
Query: 441 ANMETQPLPSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFVAKYVTVVLYKSMQR 277
N E P +PQHVVLNHL+++KG +S SVVALG THRF +KYVTVVLYK ++R
Sbjct: 235 ENSEEAPSSPKPQHVVLNHLFIEKGWASQSVVALGLTHRFQSKYVTVVLYKPLKR 289
>ref|NP_197615.1| AKIN beta1; protein id: At5g21170.1, supported by cDNA: 41668.
[Arabidopsis thaliana] gi|29294057|gb|AAO73894.1| AMPKBI
(5'-AMP-activated protein kinase, beta subunit,
complex-interacting region) domain family [Arabidopsis
thaliana]
Length = 283
Score = 116 bits (291), Expect = 2e-25
Identities = 59/117 (50%), Positives = 77/117 (65%)
Frame = -3
Query: 627 NAYNILDLQEYVPEDIGGISSFEPPKSPDSSYSNLQLGSEDYAKEPPLVPPFLQMTLLNV 448
N NILD+ +VPE+ I FE P SPD SY +EDYAKEP VPP L +TLL
Sbjct: 171 NVCNILDVHNFVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT 230
Query: 447 PSANMETQPLPSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFVAKYVTVVLYKSMQR 277
E + ++PQHVVLNH+++++G + S+VALG THRF +KY+TVVLYK + R
Sbjct: 231 T----EETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,512,494
Number of Sequences: 1393205
Number of extensions: 12108162
Number of successful extensions: 30482
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 29237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30430
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
