Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009719A_C01 KMC009719A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182109.1| putative AT-hook DNA-binding protein; protein i... 72 8e-12
gb|AAM91589.1| putative DNA-binding protein [Arabidopsis thaliana] 63 3e-09
ref|NP_191690.1| putative DNA-binding protein; protein id: At3g6... 63 3e-09
pir||T06584 probable DNA-binding protein - garden pea gi|2213536... 48 1e-04
gb|AAF19697.1|AC008047_4 F2K11.15 [Arabidopsis thaliana] 48 1e-04
>ref|NP_182109.1| putative AT-hook DNA-binding protein; protein id: At2g45850.1,
supported by cDNA: gi_14194130, supported by cDNA:
gi_16323337, supported by cDNA: gi_17065245 [Arabidopsis
thaliana] gi|7484932|pir||T02462 probable AT-hook
DNA-binding protein [imported] - Arabidopsis thaliana
gi|3386609|gb|AAC28539.1| putative AT-hook DNA-binding
protein [Arabidopsis thaliana]
gi|14194131|gb|AAK56260.1|AF367271_1 At2g45850/F4I18.17
[Arabidopsis thaliana] gi|16323338|gb|AAL15382.1|
At2g45850/F4I18.17 [Arabidopsis thaliana]
gi|17065246|gb|AAL32777.1| putative AT-hook DNA-binding
protein [Arabidopsis thaliana]
gi|21387187|gb|AAM47997.1| putative AT-hook DNA-binding
protein [Arabidopsis thaliana]
Length = 348
Score = 71.6 bits (174), Expect = 8e-12
Identities = 47/96 (48%), Positives = 54/96 (55%), Gaps = 7/96 (7%)
Frame = -1
Query: 650 GVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSIS----- 486
G LIAAS VQVIVGSFIW K K+KK E+ V DH + N N+IS
Sbjct: 262 GPLIAASPVQVIVGSFIWAAPKIKSKKREEEASEVVQETDDHHVLDN--NNNTISPVPQQ 319
Query: 485 -PNQNLTAISSPSPW-PASRTLDMRNSHIDIDLMRG 384
PNQNL W SR +DMR++H DIDLMRG
Sbjct: 320 QPNQNLI-------WSTGSRQMDMRHAHADIDLMRG 348
>gb|AAM91589.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 354
Score = 63.2 bits (152), Expect = 3e-09
Identities = 39/91 (42%), Positives = 51/91 (55%), Gaps = 2/91 (2%)
Frame = -1
Query: 650 GVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSISPNQNL 471
G LIAAS VQVIVGSFIW K K KK E++ ++ N A + P Q+
Sbjct: 264 GPLIAASQVQVIVGSFIWAIPKGKIKKREETSEDVQDTDALENNNDNTAATSPPVPQQSQ 323
Query: 470 TAISSP-SPW-PASRTLDMRNSHIDIDLMRG 384
+ +P W SR++DM + H+DIDLMRG
Sbjct: 324 NIVQTPVGIWSTGSRSMDMHHPHMDIDLMRG 354
>ref|NP_191690.1| putative DNA-binding protein; protein id: At3g61310.1 [Arabidopsis
thaliana] gi|11281387|pir||T47923 probable DNA-binding
protein - Arabidopsis thaliana
gi|6850898|emb|CAB71061.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 348
Score = 63.2 bits (152), Expect = 3e-09
Identities = 39/91 (42%), Positives = 51/91 (55%), Gaps = 2/91 (2%)
Frame = -1
Query: 650 GVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSISPNQNL 471
G LIAAS VQVIVGSFIW K K KK E++ ++ N A + P Q+
Sbjct: 258 GPLIAASQVQVIVGSFIWAIPKGKIKKREETSEDVQDTDALENNNDNTAATSPPVPQQSQ 317
Query: 470 TAISSP-SPW-PASRTLDMRNSHIDIDLMRG 384
+ +P W SR++DM + H+DIDLMRG
Sbjct: 318 NIVQTPVGIWSTGSRSMDMHHPHMDIDLMRG 348
>pir||T06584 probable DNA-binding protein - garden pea
gi|2213536|emb|CAA67290.1| DNA-binding protein PD1
[Pisum sativum]
Length = 347
Score = 48.1 bits (113), Expect = 1e-04
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = -1
Query: 647 VLIAASLVQVIVGSFIW-GGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSISPNQNL 471
+LIA S +Q++V SF++ GGSK K K+ + G S E + + +P S P+QN
Sbjct: 263 MLIAGSPIQLVVCSFVYGGGSKVKTKQGMITNGE--SSEPHNDNLGSPA---SAPPDQNY 317
Query: 470 TAISSPS-PWPASRTLDMRN--SHIDIDLMRG 384
ISSP+ WP S+ DM++ +H IDL RG
Sbjct: 318 --ISSPTGMWPGSQPSDMKSAPAHTGIDLTRG 347
>gb|AAF19697.1|AC008047_4 F2K11.15 [Arabidopsis thaliana]
Length = 826
Score = 47.8 bits (112), Expect = 1e-04
Identities = 44/131 (33%), Positives = 58/131 (43%), Gaps = 19/131 (14%)
Frame = -1
Query: 650 GVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEV---------SMESDHQAVHNPVAV 498
G+LIAASLVQV+ SF++G S N N + E+ ME+ + A
Sbjct: 635 GMLIAASLVQVVACSFVYGASAKSNNNNNKTIKQEIKPKQEPTNSEMETTPGSAPEAAAS 694
Query: 497 NSISPNQNLTAISSPSPWPAS-----RTLD-MRNSHIDIDLMRG*QFI*HSPV----VVL 348
QN A S WP S R+LD RN DIDL RG I + VV+
Sbjct: 695 TGQHTPQNFPA-QGMSGWPVSGSGSGRSLDSSRNPLTDIDLTRGSSSIHYVSAVHIFVVV 753
Query: 347 DFYFRLMVPHL 315
DF ++ P +
Sbjct: 754 DFSLGMLKPDI 764
Score = 31.6 bits (70), Expect = 9.7
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Frame = -1
Query: 647 VLIAASLVQVIVGSFIWGG-SKTKNKKNEDSEGAEVSMESDHQA 519
+LIAA+LVQV+ SF++G +KT N N+ + E D+ +
Sbjct: 260 MLIAANLVQVVACSFVYGARAKTHNNNNKTIRQEKEPNEEDNNS 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,769,373
Number of Sequences: 1393205
Number of extensions: 11095957
Number of successful extensions: 24894
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24887
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
