Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009718A_C01 KMC009718A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199013.1| putative protein; protein id: At5g41980.1 [Arab... 78 7e-14
ref|NP_190050.1| putative protein; protein id: At3g44640.1 [Arab... 67 1e-10
ref|NP_198077.1| putative protein; protein id: At5g27250.1 [Arab... 60 2e-08
gb|AAM93719.1| hypothetical protein [Oryza sativa (japonica cult... 57 2e-07
ref|NP_680341.1| similar to En/Spm-like transposon protein; prot... 56 3e-07
>ref|NP_199013.1| putative protein; protein id: At5g41980.1 [Arabidopsis thaliana]
gi|9757943|dbj|BAB08431.1|
emb|CAB72466.1~gene_id:MJC20.8~similar to unknown
protein [Arabidopsis thaliana]
gi|28416671|gb|AAO42866.1| At5g41980 [Arabidopsis
thaliana]
Length = 374
Score = 78.2 bits (191), Expect = 7e-14
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Frame = -2
Query: 594 AKELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQIQRDIVIAACVLHNIIRREDR 415
AKE+FN RH L AI R+F LK RFPIL+ AP Y Q Q +VIAAC LHN +R E
Sbjct: 247 AKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYVRLEKP 306
Query: 414 NDWLF-----NSLGGTPVDELTVLDELPDVQLLSS------MQEQLAFSLRDSIASAMWD 268
+D +F +L D L+E V+++ + + + LRD IAS +W+
Sbjct: 307 DDLVFRMFEEETLAEAGEDREVALEE-EQVEIVGQEHGFRPEEVEDSLRLRDEIASELWN 365
Query: 267 DFL 259
++
Sbjct: 366 HYV 368
>ref|NP_190050.1| putative protein; protein id: At3g44640.1 [Arabidopsis thaliana]
gi|11358076|pir||T47439 hypothetical protein T18B22.40 -
Arabidopsis thaliana gi|6967112|emb|CAB72466.1| putative
protein [Arabidopsis thaliana]
Length = 377
Score = 67.4 bits (163), Expect = 1e-10
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Frame = -2
Query: 588 ELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQIQRDIVIAACVLHNIIRREDRND 409
ELFN RH LR I R F + K+RF I AP Y F+ Q ++V+A LHN + +E R+D
Sbjct: 262 ELFNLRHASLRNVIERIFGIFKSRFLIFKSAPPYPFKTQTELVLACAGLHNFLHQECRSD 321
Query: 408 WLFNSLG----GTPVDELTVLDELPDVQLLSSMQEQLAFSLRDSIASAMWDD 265
+ +E +E DV +L S Q + A + RD+I+ MW D
Sbjct: 322 EFPPETSINEENSDDNEENNYEENGDVGILESQQREYANNWRDTISHNMWMD 373
>ref|NP_198077.1| putative protein; protein id: At5g27250.1 [Arabidopsis thaliana]
Length = 348
Score = 60.1 bits (144), Expect = 2e-08
Identities = 43/115 (37%), Positives = 59/115 (50%), Gaps = 4/115 (3%)
Frame = -2
Query: 588 ELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQIQRDIVIAACVLHNIIRREDRND 409
ELFN RH LR I R F + K+RF I AP +SF+ Q +IV++ LHN +R++ R+D
Sbjct: 229 ELFNLRHASLRNVIERIFGIFKSRFLIFKSAPPFSFKTQAEIVLSCAALHNFLRQKCRSD 288
Query: 408 -WLFNSLGGTPVDELTVLDELPDVQLLSSMQEQ---LAFSLRDSIASAMWDDFLN 256
+ + T VD E + QEQ A R +IA+ MW D N
Sbjct: 289 EFSSDEEDETDVDNANQNSEENGGEENVETQEQEREHARHWRATIAADMWRDATN 343
>gb|AAM93719.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 481
Score = 56.6 bits (135), Expect = 2e-07
Identities = 31/68 (45%), Positives = 39/68 (56%)
Frame = -2
Query: 591 KELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQIQRDIVIAACVLHNIIRREDRN 412
KELFNHRH LR I R+ VLK RFPIL +S + Q I +A V HN+IR + +
Sbjct: 152 KELFNHRHAILRNHIERTIGVLKKRFPILKVGTHHSIENQVKIPVATVVFHNLIRMLNGD 211
Query: 411 DWLFNSLG 388
+ N G
Sbjct: 212 EGWLNHQG 219
>ref|NP_680341.1| similar to En/Spm-like transposon protein; protein id: At5g35695.1
[Arabidopsis thaliana]
Length = 211
Score = 56.2 bits (134), Expect = 3e-07
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = -2
Query: 588 ELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQIQRDIVIAACVLHNIIRREDRND 409
ELFN RH LR I R F + K+RF I AP +S++ Q +V+ LHN +R+E R+D
Sbjct: 88 ELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFLRKECRSD 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,891,162
Number of Sequences: 1393205
Number of extensions: 10050656
Number of successful extensions: 35956
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 33287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35278
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
