Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009717A_C01 KMC009717A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09961 cyclin D-like protein - red goosefoot gi|1770190|emb... 117 6e-26
emb|CAD43141.1| cyclin D2 [Daucus carota] 113 1e-24
emb|CAA09852.1| cyclin D2.1 protein [Nicotiana tabacum] 104 5e-22
pir||S51651 cyclin delta-2 - Arabidopsis thaliana 87 1e-16
ref|NP_179835.1| Cyclin D2;1; protein id: At2g22490.1 [Arabidops... 87 1e-16
>pir||T09961 cyclin D-like protein - red goosefoot gi|1770190|emb|CAA71244.1|
cyclin-D like protein [Chenopodium rubrum]
Length = 372
Score = 117 bits (294), Expect = 6e-26
Identities = 71/134 (52%), Positives = 91/134 (66%), Gaps = 11/134 (8%)
Frame = -1
Query: 493 SLISRSTQLILSTIRGLDFLAFKPSEIAAAVAMYVVGETQSVD-TDQTISILIQHVEKER 317
SLI ++ QLILSTI+G+D + F+PSEIAAAVA+ V +TQ V+ TD+ S L HVEKER
Sbjct: 232 SLIFQAIQLILSTIKGIDLMEFRPSEIAAAVAISVTQQTQIVEFTDKAFSFLTDHVEKER 291
Query: 316 LMKCVEMIHEL--SSNKDSSASAPCVPPSPIGVLEA-GCFSYKS-DVDTNAGSSC----- 164
LMKCVE++H+L SS + + ++ VP SPIGVL+A C SYKS D T SC
Sbjct: 292 LMKCVEIMHDLRMSSRSNGALASTSVPQSPIGVLDASACLSYKSDDTSTTPSGSCGNSAH 351
Query: 163 -SSDNSPSAKRRKL 125
S ++P KRRKL
Sbjct: 352 SSPASAPPPKRRKL 365
>emb|CAD43141.1| cyclin D2 [Daucus carota]
Length = 382
Score = 113 bits (282), Expect = 1e-24
Identities = 66/137 (48%), Positives = 89/137 (64%), Gaps = 8/137 (5%)
Frame = -1
Query: 511 DGSSLSSLISRSTQLILSTIRGLDFLAFKPSEIAAAVAMYVVGETQSVDTDQTISILIQH 332
D SLI RS Q IL T++G+DFL F+PSEI+AAVA+ V E Q++D ++ +S +I
Sbjct: 214 DALPSGSLIDRSIQFILKTMKGIDFLEFRPSEISAAVAICVTREAQTLDINKAMSNIIP- 272
Query: 331 VEKERLMKCVEMIHEL-----SSNKDSSASAPCVPPSPIGVLEAGCFSYKSD---VDTNA 176
VEK+R+ KC+EMI +L +SN S + VP SP+GVL+A C SYKSD V +
Sbjct: 273 VEKDRVFKCIEMIQDLTLVTETSNVASGRTRAQVPQSPVGVLDAACLSYKSDERTVGSCP 332
Query: 175 GSSCSSDNSPSAKRRKL 125
SS ++ SP KRRKL
Sbjct: 333 NSSLHTETSPHTKRRKL 349
>emb|CAA09852.1| cyclin D2.1 protein [Nicotiana tabacum]
Length = 354
Score = 104 bits (260), Expect = 5e-22
Identities = 63/124 (50%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Frame = -1
Query: 490 LISRSTQLILSTIRGLDFLAFKPSEIAAAVAMYVVGETQSVDTDQTISILIQHVEKERLM 311
LIS S QLILS IR +DFL F+ SEIAA+VAM V GE Q+ D D+ + H++K R+
Sbjct: 221 LISGSMQLILSIIRSIDFLEFRSSEIAASVAMSVSGEIQAKDIDKAMPCFFIHLDKGRVQ 280
Query: 310 KCVEMIHEL-SSNKDSSASAPCVPPSPIGVLE-AGCFSYKSDVDTNAGSSCSSDNSPSAK 137
KCVE+I +L ++ ++A+A VP SPIGVLE A C SYKS + GS +S ++ K
Sbjct: 281 KCVELIQDLTTATITTAAAASLVPQSPIGVLEAAACLSYKSGDERTVGSCTTSSHT---K 337
Query: 136 RRKL 125
RRKL
Sbjct: 338 RRKL 341
>pir||S51651 cyclin delta-2 - Arabidopsis thaliana
Length = 383
Score = 87.0 bits (214), Expect = 1e-16
Identities = 50/133 (37%), Positives = 83/133 (61%), Gaps = 12/133 (9%)
Frame = -1
Query: 508 GSSLSSLISRSTQLILSTIRGLDFLAFKPSEI--AAAVAMYVVGETQSVDTDQTISILIQ 335
G +LI RS++ IL+T + ++FL F+PSEI AAAV++ + GET+ +D ++ +S LI
Sbjct: 214 GHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETECIDEEKALSSLI- 272
Query: 334 HVEKERLMKCVEMIHELS----------SNKDSSASAPCVPPSPIGVLEAGCFSYKSDVD 185
+V++ER+ +C+ ++ L+ S + + + VP SP+GVLEA C SY+S+
Sbjct: 273 YVKQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAVPASPVGVLEATCLSYRSEER 332
Query: 184 TNAGSSCSSDNSP 146
T + SS +SP
Sbjct: 333 TVESCTNSSQSSP 345
>ref|NP_179835.1| Cyclin D2;1; protein id: At2g22490.1 [Arabidopsis thaliana]
gi|3915636|sp|P42752|CGD2_ARATH Cyclin delta-2
gi|25412110|pir||C84613 probable cyclin D [imported] -
Arabidopsis thaliana gi|2995132|emb|CAA58286.1| cyclin
delta-2 [Arabidopsis thaliana] gi|4544444|gb|AAD22352.1|
putative cyclin D [Arabidopsis thaliana]
Length = 361
Score = 87.0 bits (214), Expect = 1e-16
Identities = 50/133 (37%), Positives = 83/133 (61%), Gaps = 12/133 (9%)
Frame = -1
Query: 508 GSSLSSLISRSTQLILSTIRGLDFLAFKPSEI--AAAVAMYVVGETQSVDTDQTISILIQ 335
G +LI RS++ IL+T + ++FL F+PSEI AAAV++ + GET+ +D ++ +S LI
Sbjct: 214 GHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETECIDEEKALSSLI- 272
Query: 334 HVEKERLMKCVEMIHELS----------SNKDSSASAPCVPPSPIGVLEAGCFSYKSDVD 185
+V++ER+ +C+ ++ L+ S + + + VP SP+GVLEA C SY+S+
Sbjct: 273 YVKQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAVPASPVGVLEATCLSYRSEER 332
Query: 184 TNAGSSCSSDNSP 146
T + SS +SP
Sbjct: 333 TVESCTNSSQSSP 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,076,015
Number of Sequences: 1393205
Number of extensions: 10543077
Number of successful extensions: 26811
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 25970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26771
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
