Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009713A_C01 KMC009713A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180811.1| putative carboxymethylenebutenolidase; protein ... 91 1e-17
gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsi... 91 1e-17
dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sat... 82 4e-15
ref|ZP_00091458.1| hypothetical protein [Azotobacter vinelandii] 40 0.016
ref|ZP_00128010.1| hypothetical protein [Pseudomonas syringae pv... 37 0.14
>ref|NP_180811.1| putative carboxymethylenebutenolidase; protein id: At2g32520.1,
supported by cDNA: 2114. [Arabidopsis thaliana]
gi|7435073|pir||T02551 probable
carboxymethylenebutenolidase [imported] - Arabidopsis
thaliana gi|3298540|gb|AAC25934.1| putative
carboxymethylenebutenolidase [Arabidopsis thaliana]
Length = 239
Score = 90.5 bits (223), Expect = 1e-17
Identities = 38/51 (74%), Positives = 44/51 (85%)
Frame = -2
Query: 520 EVHMYPGNAHAFMNRSPEGIQRRKEMGMPDEDEAAVQLAWSRFQTWMTSYL 368
EVH+YPGN HAF+NRSPEG+ RRK MG+ DEDEAAV+LAWSRF +WM YL
Sbjct: 188 EVHIYPGNGHAFLNRSPEGVSRRKSMGLSDEDEAAVELAWSRFTSWMKQYL 238
>gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsis thaliana]
Length = 239
Score = 90.5 bits (223), Expect = 1e-17
Identities = 38/51 (74%), Positives = 44/51 (85%)
Frame = -2
Query: 520 EVHMYPGNAHAFMNRSPEGIQRRKEMGMPDEDEAAVQLAWSRFQTWMTSYL 368
EVH+YPGN HAF+NRSPEG+ RRK MG+ DEDEAAV+LAWSRF +WM YL
Sbjct: 188 EVHIYPGNGHAFLNRSPEGVSRRKSMGLSDEDEAAVELAWSRFTSWMKQYL 238
>dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sativa (japonica
cultivar-group)]
Length = 281
Score = 82.0 bits (201), Expect = 4e-15
Identities = 35/53 (66%), Positives = 44/53 (82%)
Frame = -2
Query: 520 EVHMYPGNAHAFMNRSPEGIQRRKEMGMPDEDEAAVQLAWSRFQTWMTSYLYS 362
EVH+YPG +HAFMN SPE ++RRKEMG+ DE++AA+ LAWSRF TWM +L S
Sbjct: 228 EVHIYPGCSHAFMNTSPEAVKRRKEMGLTDENQAAIDLAWSRFSTWMGRFLGS 280
>ref|ZP_00091458.1| hypothetical protein [Azotobacter vinelandii]
Length = 295
Score = 40.0 bits (92), Expect = 0.016
Identities = 21/51 (41%), Positives = 23/51 (44%)
Frame = -2
Query: 520 EVHMYPGNAHAFMNRSPEGIQRRKEMGMPDEDEAAVQLAWSRFQTWMTSYL 368
E H+YPG H F N S P DEAA +LAW R W YL
Sbjct: 255 EAHIYPGTQHGFHNDST-----------PRYDEAAARLAWDRTIAWFRRYL 294
>ref|ZP_00128010.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 342
Score = 37.0 bits (84), Expect = 0.14
Identities = 20/51 (39%), Positives = 23/51 (44%)
Frame = -2
Query: 520 EVHMYPGNAHAFMNRSPEGIQRRKEMGMPDEDEAAVQLAWSRFQTWMTSYL 368
E ++YPG H F N S P DEAA +LAW R W YL
Sbjct: 302 ETYIYPGANHGFHNDST-----------PRYDEAAAKLAWDRTLGWFNKYL 341
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,914,068
Number of Sequences: 1393205
Number of extensions: 9760106
Number of successful extensions: 27497
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 26847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27487
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
