Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009711A_C01 KMC009711A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL57713.1| AT5g65000/MXK3_23 [Arabidopsis thaliana] 116 2e-25
ref|NP_569004.1| putative protein; protein id: At5g65000.1, supp... 116 2e-25
dbj|BAA97312.1| gene_id:MXK3.23~ref|NP_036375.1~similar to unkno... 116 2e-25
ref|NP_502448.1| CMP-sialic acid transporter, possibly N-myristo... 39 0.027
ref|NP_503252.1| Predicted CDS, putative plasma membrane membran... 36 0.30
>gb|AAL57713.1| AT5g65000/MXK3_23 [Arabidopsis thaliana]
Length = 325
Score = 116 bits (290), Expect = 2e-25
Identities = 59/69 (85%), Positives = 63/69 (90%)
Frame = -1
Query: 516 GGILVGLVTSYAXGVRKGFVIVSALLVTALLQFIFEGKPPSLYCLAALPLVVSSISVYQK 337
GGILVGLVTS+A GVRKGFVIVSALLVTALLQF FEGKPPS YCL ALPLV+SSIS+YQK
Sbjct: 255 GGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISMYQK 314
Query: 336 YPYRVKKKE 310
YPY KKK+
Sbjct: 315 YPYIDKKKK 323
>ref|NP_569004.1| putative protein; protein id: At5g65000.1, supported by cDNA:
142216., supported by cDNA: gi_18086578 [Arabidopsis
thaliana] gi|21553407|gb|AAM62500.1| unknown
[Arabidopsis thaliana]
Length = 325
Score = 116 bits (290), Expect = 2e-25
Identities = 59/69 (85%), Positives = 63/69 (90%)
Frame = -1
Query: 516 GGILVGLVTSYAXGVRKGFVIVSALLVTALLQFIFEGKPPSLYCLAALPLVVSSISVYQK 337
GGILVGLVTS+A GVRKGFVIVSALLVTALLQF FEGKPPS YCL ALPLV+SSIS+YQK
Sbjct: 255 GGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISMYQK 314
Query: 336 YPYRVKKKE 310
YPY KKK+
Sbjct: 315 YPYIDKKKK 323
>dbj|BAA97312.1| gene_id:MXK3.23~ref|NP_036375.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 262
Score = 116 bits (290), Expect = 2e-25
Identities = 59/69 (85%), Positives = 63/69 (90%)
Frame = -1
Query: 516 GGILVGLVTSYAXGVRKGFVIVSALLVTALLQFIFEGKPPSLYCLAALPLVVSSISVYQK 337
GGILVGLVTS+A GVRKGFVIVSALLVTALLQF FEGKPPS YCL ALPLV+SSIS+YQK
Sbjct: 192 GGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISMYQK 251
Query: 336 YPYRVKKKE 310
YPY KKK+
Sbjct: 252 YPYIDKKKK 260
>ref|NP_502448.1| CMP-sialic acid transporter, possibly N-myristoylated
[Caenorhabditis elegans] gi|7511402|pir||T28083
hypothetical protein ZK896.9 - Caenorhabditis elegans
gi|3881869|emb|CAB05326.1| Hypothetical protein ZK896.9
[Caenorhabditis elegans]
Length = 390
Score = 39.3 bits (90), Expect = 0.027
Identities = 17/64 (26%), Positives = 32/64 (49%)
Frame = -1
Query: 516 GGILVGLVTSYAXGVRKGFVIVSALLVTALLQFIFEGKPPSLYCLAALPLVVSSISVYQK 337
GG++V +V YA + K F A+++ + + PS+ L V++++ Y
Sbjct: 302 GGLVVAVVIKYADNILKAFATSLAIVLNCIAAYFLFNFRPSILFLVGASGVIAAVFAYSM 361
Query: 336 YPYR 325
YPY+
Sbjct: 362 YPYK 365
>ref|NP_503252.1| Predicted CDS, putative plasma membrane membrane protein family
member, with at least 5 transmembrane domains, of
eukaryotic origin [Caenorhabditis elegans]
gi|7505391|pir||T32293 hypothetical protein K06H6.3 -
Caenorhabditis elegans gi|2394478|gb|AAB70363.1|
Hypothetical protein K06H6.3 [Caenorhabditis elegans]
Length = 314
Score = 35.8 bits (81), Expect = 0.30
Identities = 21/62 (33%), Positives = 31/62 (49%)
Frame = -1
Query: 516 GGILVGLVTSYAXGVRKGFVIVSALLVTALLQFIFEGKPPSLYCLAALPLVVSSISVYQK 337
GG+ + LV YA V K + A+ T+++ + SLY + LV SS+ VY
Sbjct: 231 GGLCISLVMKYADNVMKTYCQSLAIGFTSIVSICLGDRLLSLYLGYGVFLVTSSVVVYSL 290
Query: 336 YP 331
YP
Sbjct: 291 YP 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,957,348
Number of Sequences: 1393205
Number of extensions: 8693534
Number of successful extensions: 19495
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 19021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19491
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
