KMC009696A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC009696A_C01 KMC009696A_c01
gaggaaagtttacttaataaaacaaatgcttagacaaaactgAATACAACATCATAAATT
TATAAAATAGTACTCACATGAAGTCATAAATATATAAGTAAATAATAAGGTCCAAAATAG
TACTAACATGAAGTCATAAATTGATAAATATATAAGTAAATAATAAGGTCCAAAATAACC
AAATGCAAGAGAAGAAAGCGGGTGTCACCATTGATGAAATTGCGCTGACGTCAAATCTCC
CCATCATTGTCGGTCATCACACTAAGTCGACTTTTCTTAATCATGAATGCAGTCTATTCG
TTAAAGAAAAGCCTCTAATCGCAACTGAAGCTGGTCAAATTGTCTCCAGCTTCAGCAGCG
ATAAAAACTGTTCTTTGATCAATTTGCTGCATCGATGATGAAGATGAGCCGACTGGGTGT
ATTAACGGGTAATGATGGAGAATTATTAGGAGGACAATGGCGTAATGGGTTTCGGTTAGG
AGTTTCTTGTTCATGGTGTTTGAAGGTAGAGATGTGGGCTTTCTGGTGGTCATGGTGTTT
GGTTGTGTGCCTAGGTTAAGTGGAGACAAAAGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC009696A_C01 KMC009696A_c01
         (573 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD37427.1|AF149277_1 peroxidase 1 precursor [Phaseolus vulga...    42  0.005
pir||T02067 probable peroxidase (EC 1.11.1.7), cationic - rice g...    41  0.012
emb|CAB53490.1| CAA303717.1 protein [Oryza sativa]                     41  0.012
pir||T09665 peroxidase (EC 1.11.1.7) pxdC precursor - alfalfa gi...    40  0.016
gb|AAC98519.1| peroxidase precursor [Glycine max]                      40  0.027

>gb|AAD37427.1|AF149277_1 peroxidase 1 precursor [Phaseolus vulgaris]
          Length = 341

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 22/54 (40%), Positives = 32/54 (58%)
 Frame = -2

Query: 362 IAAEAGDNLTSFSCD*RLFFNE*TAFMIKKSRLSVMTDNDGEI*RQRNFINGDT 201
           I A+  D +  FS +  LFF    A MIK   + V+T + GEI +Q NF+NG++
Sbjct: 268 IGADTIDIVNRFSSNQTLFFESFKAAMIKMGNIGVLTGSQGEIRKQCNFVNGNS 321

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 368 LFFDQFAASMMKMSRLGVLTGNDGEL 445
           LFF+ F A+M+KM  +GVLTG+ GE+
Sbjct: 285 LFFESFKAAMIKMGNIGVLTGSQGEI 310

>pir||T02067 probable peroxidase (EC 1.11.1.7), cationic - rice
           gi|2425101|gb|AAB81720.1| cationic peroxidase [Oryza
           sativa]
          Length = 353

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +2

Query: 371 FFDQFAASMMKMSRLGVLTGNDGEL 445
           FFDQFA SM+KMS++ VLTGN GE+
Sbjct: 294 FFDQFARSMVKMSQMDVLTGNAGEI 318

>emb|CAB53490.1| CAA303717.1 protein [Oryza sativa]
          Length = 342

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +2

Query: 371 FFDQFAASMMKMSRLGVLTGNDGEL 445
           FFDQFA SM+KMS++ VLTGN GE+
Sbjct: 290 FFDQFARSMVKMSQMDVLTGNAGEI 314

>pir||T09665 peroxidase (EC 1.11.1.7) pxdC precursor - alfalfa
           gi|537317|gb|AAB41811.1| peroxidase [Medicago sativa]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.016
 Identities = 20/46 (43%), Positives = 31/46 (66%)
 Frame = -2

Query: 338 LTSFSCD*RLFFNE*TAFMIKKSRLSVMTDNDGEI*RQRNFINGDT 201
           + SF+ +  LFF    A MIK S++ V+T + GEI +Q NF+NG++
Sbjct: 289 VNSFNNNQTLFFEAFKASMIKMSKIKVLTGSQGEIRKQCNFVNGNS 334

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +2

Query: 368 LFFDQFAASMMKMSRLGVLTGNDGEL 445
           LFF+ F ASM+KMS++ VLTG+ GE+
Sbjct: 298 LFFEAFKASMIKMSKIKVLTGSQGEI 323

>gb|AAC98519.1| peroxidase precursor [Glycine max]
          Length = 354

 Score = 39.7 bits (91), Expect = 0.027
 Identities = 17/27 (62%), Positives = 21/27 (76%)
 Frame = +2

Query: 365 KLFFDQFAASMMKMSRLGVLTGNDGEL 445
           K+FFD F ASM+KM  +GVLTG  GE+
Sbjct: 295 KVFFDAFEASMIKMGNIGVLTGKKGEI 321

 Score = 34.7 bits (78), Expect = 0.87
 Identities = 17/40 (42%), Positives = 24/40 (59%)
 Frame = -2

Query: 329 FSCD*RLFFNE*TAFMIKKSRLSVMTDNDGEI*RQRNFIN 210
           FS D ++FF+   A MIK   + V+T   GEI +  NF+N
Sbjct: 290 FSSDQKVFFDAFEASMIKMGNIGVLTGKKGEIRKHCNFVN 329

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,810,076
Number of Sequences: 1393205
Number of extensions: 9563531
Number of successful extensions: 32535
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 29429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32047
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF056g06_f BP031255 1 501
2 MR016h10_f BP077228 43 573




Lotus japonicus
Kazusa DNA Research Institute