KMC009696A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC009696A_C01 KMC009696A_c01
gaggaaagtttacttaataaaacaaatgcttagacaaaactgAATACAACATCATAAATT
TATAAAATAGTACTCACATGAAGTCATAAATATATAAGTAAATAATAAGGTCCAAAATAG
TACTAACATGAAGTCATAAATTGATAAATATATAAGTAAATAATAAGGTCCAAAATAACC
AAATGCAAGAGAAGAAAGCGGGTGTCACCATTGATGAAATTGCGCTGACGTCAAATCTCC
CCATCATTGTCGGTCATCACACTAAGTCGACTTTTCTTAATCATGAATGCAGTCTATTCG
TTAAAGAAAAGCCTCTAATCGCAACTGAAGCTGGTCAAATTGTCTCCAGCTTCAGCAGCG
ATAAAAACTGTTCTTTGATCAATTTGCTGCATCGATGATGAAGATGAGCCGACTGGGTGT
ATTAACGGGTAATGATGGAGAATTATTAGGAGGACAATGGCGTAATGGGTTTCGGTTAGG
AGTTTCTTGTTCATGGTGTTTGAAGGTAGAGATGTGGGCTTTCTGGTGGTCATGGTGTTT
GGTTGTGTGCCTAGGTTAAGTGGAGACAAAAGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009696A_C01 KMC009696A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD37427.1|AF149277_1 peroxidase 1 precursor [Phaseolus vulga... 42 0.005
pir||T02067 probable peroxidase (EC 1.11.1.7), cationic - rice g... 41 0.012
emb|CAB53490.1| CAA303717.1 protein [Oryza sativa] 41 0.012
pir||T09665 peroxidase (EC 1.11.1.7) pxdC precursor - alfalfa gi... 40 0.016
gb|AAC98519.1| peroxidase precursor [Glycine max] 40 0.027
>gb|AAD37427.1|AF149277_1 peroxidase 1 precursor [Phaseolus vulgaris]
Length = 341
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/54 (40%), Positives = 32/54 (58%)
Frame = -2
Query: 362 IAAEAGDNLTSFSCD*RLFFNE*TAFMIKKSRLSVMTDNDGEI*RQRNFINGDT 201
I A+ D + FS + LFF A MIK + V+T + GEI +Q NF+NG++
Sbjct: 268 IGADTIDIVNRFSSNQTLFFESFKAAMIKMGNIGVLTGSQGEIRKQCNFVNGNS 321
Score = 37.4 bits (85), Expect = 0.13
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 368 LFFDQFAASMMKMSRLGVLTGNDGEL 445
LFF+ F A+M+KM +GVLTG+ GE+
Sbjct: 285 LFFESFKAAMIKMGNIGVLTGSQGEI 310
>pir||T02067 probable peroxidase (EC 1.11.1.7), cationic - rice
gi|2425101|gb|AAB81720.1| cationic peroxidase [Oryza
sativa]
Length = 353
Score = 40.8 bits (94), Expect = 0.012
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 371 FFDQFAASMMKMSRLGVLTGNDGEL 445
FFDQFA SM+KMS++ VLTGN GE+
Sbjct: 294 FFDQFARSMVKMSQMDVLTGNAGEI 318
>emb|CAB53490.1| CAA303717.1 protein [Oryza sativa]
Length = 342
Score = 40.8 bits (94), Expect = 0.012
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 371 FFDQFAASMMKMSRLGVLTGNDGEL 445
FFDQFA SM+KMS++ VLTGN GE+
Sbjct: 290 FFDQFARSMVKMSQMDVLTGNAGEI 314
>pir||T09665 peroxidase (EC 1.11.1.7) pxdC precursor - alfalfa
gi|537317|gb|AAB41811.1| peroxidase [Medicago sativa]
Length = 353
Score = 40.4 bits (93), Expect = 0.016
Identities = 20/46 (43%), Positives = 31/46 (66%)
Frame = -2
Query: 338 LTSFSCD*RLFFNE*TAFMIKKSRLSVMTDNDGEI*RQRNFINGDT 201
+ SF+ + LFF A MIK S++ V+T + GEI +Q NF+NG++
Sbjct: 289 VNSFNNNQTLFFEAFKASMIKMSKIKVLTGSQGEIRKQCNFVNGNS 334
Score = 37.4 bits (85), Expect = 0.13
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +2
Query: 368 LFFDQFAASMMKMSRLGVLTGNDGEL 445
LFF+ F ASM+KMS++ VLTG+ GE+
Sbjct: 298 LFFEAFKASMIKMSKIKVLTGSQGEI 323
>gb|AAC98519.1| peroxidase precursor [Glycine max]
Length = 354
Score = 39.7 bits (91), Expect = 0.027
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = +2
Query: 365 KLFFDQFAASMMKMSRLGVLTGNDGEL 445
K+FFD F ASM+KM +GVLTG GE+
Sbjct: 295 KVFFDAFEASMIKMGNIGVLTGKKGEI 321
Score = 34.7 bits (78), Expect = 0.87
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = -2
Query: 329 FSCD*RLFFNE*TAFMIKKSRLSVMTDNDGEI*RQRNFIN 210
FS D ++FF+ A MIK + V+T GEI + NF+N
Sbjct: 290 FSSDQKVFFDAFEASMIKMGNIGVLTGKKGEIRKHCNFVN 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,810,076
Number of Sequences: 1393205
Number of extensions: 9563531
Number of successful extensions: 32535
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 29429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32047
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MF056g06_f |
BP031255 |
1 |
501 |
2 |
MR016h10_f |
BP077228 |
43 |
573 |
|
Lotus japonicus
Kazusa DNA Research Institute