Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009692A_C01 KMC009692A_c01
(359 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00448.1|AC060755_18 putative gypsy-type retrotransposon po... 40 0.010
emb|CAD39657.1| OSJNBa0074B10.13 [Oryza sativa (japonica cultiva... 39 0.013
gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa] g... 39 0.013
gb|AAM01060.1|AC091735_33 Putative retroelement [Oryza sativa] g... 39 0.017
emb|CAD39760.1| OSJNBa0059D20.15 [Oryza sativa (japonica cultiva... 39 0.017
>gb|AAK00448.1|AC060755_18 putative gypsy-type retrotransposon polyprotein [Oryza sativa]
Length = 762
Score = 39.7 bits (91), Expect = 0.010
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -2
Query: 358 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 260
F N +N IF + + F++VFINDIL Y++++EE
Sbjct: 175 FMNLMNKIFMEYLDQFVVVFINDILIYSKNEEE 207
>emb|CAD39657.1| OSJNBa0074B10.13 [Oryza sativa (japonica cultivar-group)]
Length = 2115
Score = 39.3 bits (90), Expect = 0.013
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -2
Query: 358 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 260
F N +N +F F + F++VFI+DIL Y++ KEE
Sbjct: 423 FMNLMNKVFMEFLDKFVVVFIDDILIYSKSKEE 455
>gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa]
gi|19881702|gb|AAM01103.1|AC098682_7 Putative
retroelement [Oryza sativa]
Length = 1777
Score = 39.3 bits (90), Expect = 0.013
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -2
Query: 358 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 260
F N +N +F F + F++VFI+DIL Y++ KEE
Sbjct: 973 FMNLMNKVFMEFLDKFVVVFIDDILIYSKSKEE 1005
>gb|AAM01060.1|AC091735_33 Putative retroelement [Oryza sativa]
gi|21672044|gb|AAM74406.1|AC120497_6 Putative
retroelement [Oryza sativa (japonica cultivar-group)]
Length = 986
Score = 38.9 bits (89), Expect = 0.017
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = -2
Query: 358 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 260
F N +N +F + + F++VFI+DIL Y++D+EE
Sbjct: 191 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEE 223
>emb|CAD39760.1| OSJNBa0059D20.15 [Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 38.9 bits (89), Expect = 0.017
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = -2
Query: 358 FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 260
F N +N +F + + F++VFI+DIL Y++D+EE
Sbjct: 675 FMNLMNKVFMEYLDKFVVVFIDDILIYSKDEEE 707
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 286,622,879
Number of Sequences: 1393205
Number of extensions: 5299024
Number of successful extensions: 29398
Number of sequences better than 10.0: 221
Number of HSP's better than 10.0 without gapping: 28699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29292
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
