Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009687A_C01 KMC009687A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564850.1| ABC transporter family protein; protein id: At1... 86 4e-16
pir||T02364 hypothetical protein T8F5.19 - Arabidopsis thaliana ... 71 8e-12
ref|ZP_00074626.1| hypothetical protein [Trichodesmium erythraeu... 55 6e-07
gb|ZP_00110826.1| hypothetical protein [Nostoc punctiforme] 54 1e-06
ref|NP_484224.1| ATP-binding protein of ABC transporter [Nostoc ... 50 2e-05
>ref|NP_564850.1| ABC transporter family protein; protein id: At1g65410.1, supported
by cDNA: gi_13605494, supported by cDNA: gi_20334769
[Arabidopsis thaliana]
gi|13605495|gb|AAK32741.1|AF361573_1 At1g65410/T8F5_19
[Arabidopsis thaliana] gi|20334770|gb|AAM16246.1|
At1g65410/T8F5_19 [Arabidopsis thaliana]
Length = 345
Score = 85.5 bits (210), Expect = 4e-16
Identities = 41/52 (78%), Positives = 48/52 (91%)
Frame = -2
Query: 555 QHSTIKRAVDRLLFLHEGKLVWEGMTHEFTTSTENKIVQQFASGNRVGPIKY 400
QHSTI+RAVDRLLFL+EGK+VW+GMTHEFTTST N IVQQFA+G+ GPI+Y
Sbjct: 295 QHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTST-NPIVQQFATGSLDGPIRY 345
>pir||T02364 hypothetical protein T8F5.19 - Arabidopsis thaliana
gi|3335345|gb|AAC27147.1|AAC27147 Contains similarity to
ABC transporter gb|1651790 from Synechocystis sp.
gb|D90900. [Arabidopsis thaliana]
Length = 364
Score = 71.2 bits (173), Expect = 8e-12
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = -2
Query: 555 QHSTIKRAVDRLLFLHEGKLVWEGMTHEFTTSTENKIVQQFAS 427
QHSTI+RAVDRLLFL+EGK+VW+GMTHEFTTST N IVQQ S
Sbjct: 295 QHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTST-NPIVQQVPS 336
>ref|ZP_00074626.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 261
Score = 55.1 bits (131), Expect = 6e-07
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = -2
Query: 555 QHSTIKRAVDRLLFLHEGKLVWEGMTHEFTTSTENKIVQQFASGNRVGPIK 403
QHSTI+R DR++FL++GK+ WEG E T +N +V+QF +G+ GPI+
Sbjct: 209 QHSTIRRTADRIVFLYQGKVQWEGTADEIDT-VDNALVKQFFTGSVNGPIQ 258
>gb|ZP_00110826.1| hypothetical protein [Nostoc punctiforme]
Length = 260
Score = 54.3 bits (129), Expect = 1e-06
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = -2
Query: 555 QHSTIKRAVDRLLFLHEGKLVWEGMTHEFTTSTENKIVQQFASGNRVGPIK 403
Q STI+R DRL+FL+EG++ W+G E +TEN +++QF SG+ GPI+
Sbjct: 208 QDSTIRRTADRLIFLYEGRVQWQGTVSEI-YNTENPLIKQFMSGSVQGPIQ 257
>ref|NP_484224.1| ATP-binding protein of ABC transporter [Nostoc sp. PCC 7120]
gi|25297056|pir||AD1829 ATP-binding protein of ABC
transporter alr0180 [imported] - Nostoc sp. (strain PCC
7120) gi|17135158|dbj|BAB77704.1| ATP-binding protein of
ABC transporter [Nostoc sp. PCC 7120]
Length = 260
Score = 50.1 bits (118), Expect = 2e-05
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = -2
Query: 555 QHSTIKRAVDRLLFLHEGKLVWEGMTHEFTTSTENKIVQQFASGNRVGPIK 403
Q STI+R DRL+FL++G++ WEG + ST++ ++ QF SG+ GPI+
Sbjct: 208 QDSTIRRTSDRLVFLYQGQVPWEGTVSDI-DSTDDPLINQFVSGSVQGPIQ 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,865,764
Number of Sequences: 1393205
Number of extensions: 8813176
Number of successful extensions: 22255
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 21254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22204
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
