Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009683A_C01 KMC009683A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172914.1| decoy; protein id: At1g14620.1, supported by cD... 136 2e-31
gb|AAF63174.1|AC010657_10 T5E21.12 [Arabidopsis thaliana] 129 3e-29
gb|AAB48039.1| decoy [Arabidopsis thaliana] gi|1931612|gb|AAB515... 77 2e-13
gb|AAG33698.1| P2ECSL [Homo sapiens] 38 0.090
ref|NP_071446.2| mitochondrial ribosomal protein L46; chromosome... 38 0.090
>ref|NP_172914.1| decoy; protein id: At1g14620.1, supported by cDNA: gi_1842110
[Arabidopsis thaliana] gi|22022540|gb|AAM83228.1|
At1g14620/T5E21_15 [Arabidopsis thaliana]
gi|24111323|gb|AAN46785.1| At1g14620/T5E21_15
[Arabidopsis thaliana]
Length = 233
Score = 136 bits (342), Expect = 2e-31
Identities = 62/86 (72%), Positives = 74/86 (85%)
Frame = -2
Query: 607 SALKSVLGDLSNTYFVGNAPMAHMVVQPKEDLSGSTSFKNFFFKSQVIAKNQFDIGKCED 428
SALKSV+GDL++TYFVGNAPMAHM +QP E++ S+K FFFK V+A +++DI CED
Sbjct: 148 SALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKCSVVAASKYDISNCED 207
Query: 427 FVWVTKDELLEYFPEQAEFFNKMIIS 350
FVWVTKDELLE+FPEQAEFFNKMIIS
Sbjct: 208 FVWVTKDELLEFFPEQAEFFNKMIIS 233
>gb|AAF63174.1|AC010657_10 T5E21.12 [Arabidopsis thaliana]
Length = 254
Score = 129 bits (324), Expect = 3e-29
Identities = 62/93 (66%), Positives = 74/93 (78%), Gaps = 7/93 (7%)
Frame = -2
Query: 607 SALKSVLGDLSNTYFVGNAPMAHMVVQPKEDLSGSTSFK-------NFFFKSQVIAKNQF 449
SALKSV+GDL++TYFVGNAPMAHM +QP E++ S+K FFFK V+A +++
Sbjct: 162 SALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKARTNVNGRFFFKCSVVAASKY 221
Query: 448 DIGKCEDFVWVTKDELLEYFPEQAEFFNKMIIS 350
DI CEDFVWVTKDELLE+FPEQAEFFNKMIIS
Sbjct: 222 DISNCEDFVWVTKDELLEFFPEQAEFFNKMIIS 254
>gb|AAB48039.1| decoy [Arabidopsis thaliana] gi|1931612|gb|AAB51588.1| decoy
[Arabidopsis thaliana]
Length = 210
Score = 77.0 bits (188), Expect = 2e-13
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = -2
Query: 607 SALKSVLGDLSNTYFVGNAPMAHMVVQPKEDLSGSTSFKNFFFKSQVIAKNQFDI 443
SALKSV+GDL++TYFVGNAPMAHM +QP E++ S+K FFFK V+A +++DI
Sbjct: 148 SALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKCSVVAASKYDI 202
>gb|AAG33698.1| P2ECSL [Homo sapiens]
Length = 210
Score = 38.1 bits (87), Expect = 0.090
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 565 FVGNAPMAHMVVQPKEDLSGSTSF--KNFFFKSQVIAKNQFDIGKCEDFVWVTKDELLEY 392
F+GNAP H + + + ++ K FFFK+ ++ + G VWVTKDEL +Y
Sbjct: 135 FLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDY 194
>ref|NP_071446.2| mitochondrial ribosomal protein L46; chromosome 15 open reading
frame 4 [Homo sapiens]
gi|12003262|gb|AAG43507.1|AF210056_1 C15orf4 [Homo
sapiens] gi|17389733|gb|AAH17883.1|AAH17883 chromosome
15 open reading frame 4 [Homo sapiens]
Length = 279
Score = 38.1 bits (87), Expect = 0.090
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 565 FVGNAPMAHMVVQPKEDLSGSTSF--KNFFFKSQVIAKNQFDIGKCEDFVWVTKDELLEY 392
F+GNAP H + + + ++ K FFFK+ ++ + G VWVTKDEL +Y
Sbjct: 204 FLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDY 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,105,768
Number of Sequences: 1393205
Number of extensions: 8999019
Number of successful extensions: 20608
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20603
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
