Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009678A_C01 KMC009678A_c01
(450 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK20050.1|AC025783_10 putative zinc finger protein [Oryza sa... 90 5e-18
ref|NP_565112.1| DNA-binding protein; protein id: At1g75560.1, s... 55 3e-07
gb|AAM61596.1| DNA-binding protein [Arabidopsis thaliana] 55 3e-07
pir||H96785 protein F10A5.22 [imported] - Arabidopsis thaliana g... 55 3e-07
ref|NP_741323.1| Zinc knuckle (15.6 kD) [Caenorhabditis elegans]... 50 6e-06
>gb|AAK20050.1|AC025783_10 putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 247
Score = 90.1 bits (222), Expect = 5e-18
Identities = 38/48 (79%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Frame = -3
Query: 448 VVCRNCQQLGHMSRDCM-GPLMICHNCGGRGHLAYECPSGRFMDRYAP 308
VVCR C Q+GHMSRDCM G MICHNCGGRGH+AYECPSGR MDR+ P
Sbjct: 197 VVCRACNQVGHMSRDCMAGAFMICHNCGGRGHMAYECPSGRLMDRFPP 244
Score = 45.4 bits (106), Expect = 2e-04
Identities = 18/37 (48%), Positives = 25/37 (66%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPS 335
+C NC++ GH +RDC + +CH CG GH+A EC S
Sbjct: 40 LCNNCKRPGHFARDCPN-VALCHACGLPGHIAAECSS 75
Score = 44.7 bits (104), Expect = 3e-04
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCMGPLM------ICHNCGGRGHLAYEC 341
+CRNC + GH++R+C P M +C NC GHLA EC
Sbjct: 97 ICRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAEC 137
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 442 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECP 338
C NC++ GH++R+C +C+ C GHLA ECP
Sbjct: 143 CNNCRKSGHLARNCPNE-PVCNLCNVSGHLARECP 176
>ref|NP_565112.1| DNA-binding protein; protein id: At1g75560.1, supported by cDNA:
125348. [Arabidopsis thaliana]
gi|26451654|dbj|BAC42924.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|28973609|gb|AAO64129.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 257
Score = 54.7 bits (130), Expect = 3e-07
Identities = 28/46 (60%), Positives = 30/46 (64%), Gaps = 2/46 (4%)
Frame = -3
Query: 424 LGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 293
L MSRD G ++ICHNCGGRGH AYECPS R DR RRY
Sbjct: 215 LSRMSRDREGVSAMIICHNCGGRGHRAYECPSARVADR---GFRRY 257
Score = 45.4 bits (106), Expect = 2e-04
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 341
+C NC++ GH +RDC + +C+NCG GH+A EC
Sbjct: 56 LCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAEC 89
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 6/45 (13%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCM------GPLMICHNCGGRGHLAYECPSGR 329
+C +C + GH +RDC G L +C+NC +GHLA +C + +
Sbjct: 113 ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDK 157
Score = 38.5 bits (88), Expect = 0.019
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 442 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 341
C NC++ GH++ +C ICH+CG GH A +C
Sbjct: 95 CWNCREPGHVASNCSNE-GICHSCGKSGHRARDC 127
>gb|AAM61596.1| DNA-binding protein [Arabidopsis thaliana]
Length = 254
Score = 54.7 bits (130), Expect = 3e-07
Identities = 28/46 (60%), Positives = 30/46 (64%), Gaps = 2/46 (4%)
Frame = -3
Query: 424 LGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 293
L MSRD G ++ICHNCGGRGH AYECPS R DR RRY
Sbjct: 212 LSRMSRDREGVSAMIICHNCGGRGHRAYECPSARVADR---GFRRY 254
Score = 45.4 bits (106), Expect = 2e-04
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 341
+C NC++ GH +RDC + +C+NCG GH+A EC
Sbjct: 53 LCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAEC 86
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 6/45 (13%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCM------GPLMICHNCGGRGHLAYECPSGR 329
+C +C + GH +RDC G L +C+NC +GHLA +C + +
Sbjct: 110 ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDK 154
Score = 38.5 bits (88), Expect = 0.019
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 442 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 341
C NC++ GH++ +C ICH+CG GH A +C
Sbjct: 92 CWNCREPGHVASNCSNE-GICHSCGKSGHRARDC 124
>pir||H96785 protein F10A5.22 [imported] - Arabidopsis thaliana
gi|9369368|gb|AAF87117.1|AC006434_13 F10A5.22
[Arabidopsis thaliana]
Length = 265
Score = 54.7 bits (130), Expect = 3e-07
Identities = 28/46 (60%), Positives = 30/46 (64%), Gaps = 2/46 (4%)
Frame = -3
Query: 424 LGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 293
L MSRD G ++ICHNCGGRGH AYECPS R DR RRY
Sbjct: 223 LSRMSRDREGVSAMIICHNCGGRGHRAYECPSARVADR---GFRRY 265
Score = 45.4 bits (106), Expect = 2e-04
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 341
+C NC++ GH +RDC + +C+NCG GH+A EC
Sbjct: 64 LCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAEC 97
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 6/45 (13%)
Frame = -3
Query: 445 VCRNCQQLGHMSRDCM------GPLMICHNCGGRGHLAYECPSGR 329
+C +C + GH +RDC G L +C+NC +GHLA +C + +
Sbjct: 121 ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDK 165
Score = 38.5 bits (88), Expect = 0.019
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 442 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 341
C NC++ GH++ +C ICH+CG GH A +C
Sbjct: 103 CWNCREPGHVASNCSNE-GICHSCGKSGHRARDC 135
>ref|NP_741323.1| Zinc knuckle (15.6 kD) [Caenorhabditis elegans]
gi|15145371|gb|AAK84542.1|AC006672_3 Hypothetical
protein K08D12.3a [Caenorhabditis elegans]
Length = 151
Score = 50.1 bits (118), Expect = 6e-06
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Frame = -3
Query: 442 CRNCQQLGHMSRDCM------------GPLMICHNCGGRGHLAYECPSGR 329
C NCQ+ GH SRDC G C+NCGGRGH + +CPS R
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSAR 86
Score = 38.9 bits (89), Expect = 0.014
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Frame = -3
Query: 442 CRNCQQLGHMSRDCM-----------GPLMICHNCGGRGHLAYECPSG 332
C CQQ GH+SR+C G C+NC GH + +CP G
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKG 53
Score = 36.2 bits (82), Expect = 0.093
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 4/40 (10%)
Frame = -3
Query: 442 CRNCQQLGHMSRDC----MGPLMICHNCGGRGHLAYECPS 335
C NC + GH+SR+C C+ C GH++ +CPS
Sbjct: 109 CYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPS 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,038,883
Number of Sequences: 1393205
Number of extensions: 9194314
Number of successful extensions: 32734
Number of sequences better than 10.0: 1824
Number of HSP's better than 10.0 without gapping: 26740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30820
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
