Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009676A_C01 KMC009676A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06325 malate dehydrogenase (EC 1.1.1.37), nodule-enhanced ... 164 9e-40
pir||T06386 probable malate dehydrogenase (EC 1.1.1.37) - garden... 163 2e-39
pir||T09294 malate dehydrogenase (EC 1.1.1.37) precursor - alfal... 163 2e-39
emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum] 163 2e-39
ref|NP_190336.1| chloroplast NAD-dependent malate dehydrogenase;... 147 9e-35
>pir||T06325 malate dehydrogenase (EC 1.1.1.37), nodule-enhanced - soybean
gi|3273828|gb|AAC24855.1| nodule-enhanced malate
dehydrogenase [Glycine max]
Length = 413
Score = 164 bits (415), Expect = 9e-40
Identities = 81/91 (89%), Positives = 89/91 (97%)
Frame = -1
Query: 632 YAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASRVKLGKKGVEALIPSDLQGLTE 453
YAAARFVESSLRALDGDGDVYEC+YV+SDLT+LPFFASRVKLG+KGVEALIPSDLQGLT+
Sbjct: 323 YAAARFVESSLRALDGDGDVYECSYVESDLTDLPFFASRVKLGRKGVEALIPSDLQGLTD 382
Query: 452 YEQKALEALKPELKSSIEKGVAFAQKQTVAA 360
YEQKALE+LKPEL +SIEKG+AFAQKQ VAA
Sbjct: 383 YEQKALESLKPELMASIEKGIAFAQKQAVAA 413
>pir||T06386 probable malate dehydrogenase (EC 1.1.1.37) - garden pea
gi|3377762|gb|AAC28106.1| nodule-enhanced malate
dehydrogenase [Pisum sativum]
Length = 398
Score = 163 bits (413), Expect = 2e-39
Identities = 81/91 (89%), Positives = 88/91 (96%)
Frame = -1
Query: 632 YAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASRVKLGKKGVEALIPSDLQGLTE 453
YAAARFVESSLRALDGD DVYEC+YVQSDLT+LPFFASRVK+G+KGVEA IP+DLQGL+E
Sbjct: 308 YAAARFVESSLRALDGDADVYECSYVQSDLTDLPFFASRVKIGRKGVEAFIPTDLQGLSE 367
Query: 452 YEQKALEALKPELKSSIEKGVAFAQKQTVAA 360
YEQKALEALKPELK+SIEKGVAFAQKQTV A
Sbjct: 368 YEQKALEALKPELKASIEKGVAFAQKQTVVA 398
>pir||T09294 malate dehydrogenase (EC 1.1.1.37) precursor - alfalfa
gi|2827084|gb|AAB99757.1| malate dehydrogenase precursor
[Medicago sativa]
Length = 408
Score = 163 bits (413), Expect = 2e-39
Identities = 81/91 (89%), Positives = 89/91 (97%)
Frame = -1
Query: 632 YAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASRVKLGKKGVEALIPSDLQGLTE 453
YAAARFVESSLRALDGD DVYEC++VQSDLT+LPFFASRVK+G+KGVEALIP+DLQGL+E
Sbjct: 318 YAAARFVESSLRALDGDADVYECSFVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSE 377
Query: 452 YEQKALEALKPELKSSIEKGVAFAQKQTVAA 360
YEQKALEALKPELK+SIEKGVAFAQKQTV A
Sbjct: 378 YEQKALEALKPELKASIEKGVAFAQKQTVTA 408
>emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum]
Length = 412
Score = 163 bits (412), Expect = 2e-39
Identities = 82/91 (90%), Positives = 86/91 (94%)
Frame = -1
Query: 632 YAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASRVKLGKKGVEALIPSDLQGLTE 453
YAAARFVESSLRALDGD DVYECA+VQSDLTELPFFASRVKLGK GVEALIPSDLQGLTE
Sbjct: 322 YAAARFVESSLRALDGDSDVYECAFVQSDLTELPFFASRVKLGKNGVEALIPSDLQGLTE 381
Query: 452 YEQKALEALKPELKSSIEKGVAFAQKQTVAA 360
YEQKAL+ALKPELKSSIEKG+ F QK+ VAA
Sbjct: 382 YEQKALDALKPELKSSIEKGIGFVQKEPVAA 412
>ref|NP_190336.1| chloroplast NAD-dependent malate dehydrogenase; protein id:
At3g47520.1, supported by cDNA: gi_3256065 [Arabidopsis
thaliana] gi|11251147|pir||T45712 NAD-dependent malate
dehydrogenase, chloroplast - Arabidopsis thaliana
gi|6522535|emb|CAB61978.1| chloroplast NAD-dependent
malate dehydrogenase [Arabidopsis thaliana]
gi|22135807|gb|AAM91090.1| AT3g47520/F1P2_70
[Arabidopsis thaliana] gi|23308437|gb|AAN18188.1|
At3g47520/F1P2_70 [Arabidopsis thaliana]
Length = 403
Score = 147 bits (372), Expect = 9e-35
Identities = 74/91 (81%), Positives = 83/91 (90%)
Frame = -1
Query: 632 YAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASRVKLGKKGVEALIPSDLQGLTE 453
YAAARFVESSLRALDGDGDVYEC++V+S LT+LPFFASRVK+GK G+EA+I SDLQGLTE
Sbjct: 311 YAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTE 370
Query: 452 YEQKALEALKPELKSSIEKGVAFAQKQTVAA 360
YEQKALEALK ELK+SI+KGVAFA K AA
Sbjct: 371 YEQKALEALKVELKASIDKGVAFANKPAAAA 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,538,586
Number of Sequences: 1393205
Number of extensions: 10165286
Number of successful extensions: 34223
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 28762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33842
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
