Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009669A_C01 KMC009669A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176056.1| hypothetical protein; protein id: At1g56630.1 [... 155 4e-37
pir||A96608 hypothetical protein F25P12.93 [imported] - Arabidop... 155 4e-37
ref|NP_201506.1| unknown protein; protein id: At5g67050.1 [Arabi... 134 9e-31
gb|AAL07239.1| unknown protein [Arabidopsis thaliana] 127 1e-28
ref|NP_566484.1| expressed protein; protein id: At3g14360.1 [Ara... 127 1e-28
>ref|NP_176056.1| hypothetical protein; protein id: At1g56630.1 [Arabidopsis
thaliana]
Length = 364
Score = 155 bits (392), Expect = 4e-37
Identities = 71/121 (58%), Positives = 91/121 (74%)
Frame = -3
Query: 612 KENSIRYCRFVYCNDIVPRLPYDDKDLLFKHFGVCLFFNRRYELRVLEEEPNPNYFSPWC 433
KE ++Y R+VYCND+VPRLP+DDK L+FKHFG CL+ + Y+ +V EEEPN NYF+ +
Sbjct: 221 KEFDVKYKRYVYCNDMVPRLPFDDKTLMFKHFGGCLYCDSFYKGKVEEEEPNKNYFNIFW 280
Query: 432 VIPMIFNAIMEMIRSFTIAYKNGPHYREGWFLFSFRMIGLLIPGLPAHGPQDYINCTLLG 253
VIP I NA+ E+IRSF I+ G YREGW L FR++ LLIPGLPAH P +Y+N LLG
Sbjct: 281 VIPKIINAVWELIRSFIISCWQGREYREGWLLTCFRLVALLIPGLPAHFPNEYVNVALLG 340
Query: 252 S 250
+
Sbjct: 341 N 341
>pir||A96608 hypothetical protein F25P12.93 [imported] - Arabidopsis thaliana
gi|9954750|gb|AAG09101.1|AC009323_12 Hypothetical
protein [Arabidopsis thaliana]
Length = 326
Score = 155 bits (392), Expect = 4e-37
Identities = 71/121 (58%), Positives = 91/121 (74%)
Frame = -3
Query: 612 KENSIRYCRFVYCNDIVPRLPYDDKDLLFKHFGVCLFFNRRYELRVLEEEPNPNYFSPWC 433
KE ++Y R+VYCND+VPRLP+DDK L+FKHFG CL+ + Y+ +V EEEPN NYF+ +
Sbjct: 183 KEFDVKYKRYVYCNDMVPRLPFDDKTLMFKHFGGCLYCDSFYKGKVEEEEPNKNYFNIFW 242
Query: 432 VIPMIFNAIMEMIRSFTIAYKNGPHYREGWFLFSFRMIGLLIPGLPAHGPQDYINCTLLG 253
VIP I NA+ E+IRSF I+ G YREGW L FR++ LLIPGLPAH P +Y+N LLG
Sbjct: 243 VIPKIINAVWELIRSFIISCWQGREYREGWLLTCFRLVALLIPGLPAHFPNEYVNVALLG 302
Query: 252 S 250
+
Sbjct: 303 N 303
>ref|NP_201506.1| unknown protein; protein id: At5g67050.1 [Arabidopsis thaliana]
gi|10177592|dbj|BAB10939.1| gene_id:K21H1.1~unknown
protein [Arabidopsis thaliana]
Length = 487
Score = 134 bits (337), Expect = 9e-31
Identities = 58/112 (51%), Positives = 83/112 (73%)
Frame = -3
Query: 603 SIRYCRFVYCNDIVPRLPYDDKDLLFKHFGVCLFFNRRYELRVLEEEPNPNYFSPWCVIP 424
+I+Y RFVY NDIVPRLPYDDKDL+FKHFG C+++++ Y+ +V+ E+ + N+F +I
Sbjct: 347 NIKYYRFVYNNDIVPRLPYDDKDLMFKHFGTCIYYDQNYQAKVMREQSDENFFLLRGIIK 406
Query: 423 MIFNAIMEMIRSFTIAYKNGPHYREGWFLFSFRMIGLLIPGLPAHGPQDYIN 268
M+++AI+E IRSFTI + G Y EGW L R +G+++PG+ H PQDY N
Sbjct: 407 MMWSAILEFIRSFTIVAEKGSEYSEGWLLKGGRALGIIVPGVSNHTPQDYKN 458
>gb|AAL07239.1| unknown protein [Arabidopsis thaliana]
Length = 469
Score = 127 bits (319), Expect = 1e-28
Identities = 59/115 (51%), Positives = 76/115 (65%)
Frame = -3
Query: 597 RYCRFVYCNDIVPRLPYDDKDLLFKHFGVCLFFNRRYELRVLEEEPNPNYFSPWCVIPMI 418
RY R VYCNDIVPRLPYDDK L+KHFG+CLF++ Y E+EP+PN + I
Sbjct: 345 RYFRVVYCNDIVPRLPYDDKTFLYKHFGLCLFYDSFYNETKAEDEPDPNPYGLRYKILGH 404
Query: 417 FNAIMEMIRSFTIAYKNGPHYREGWFLFSFRMIGLLIPGLPAHGPQDYINCTLLG 253
A+ E++R T+ Y +GP Y+EGWF FR++GL+IPGL H DY+N LG
Sbjct: 405 VIAVWELVRGLTMGYTHGPDYKEGWFRILFRLMGLVIPGLSDHCMTDYVNSVRLG 459
>ref|NP_566484.1| expressed protein; protein id: At3g14360.1 [Arabidopsis thaliana]
gi|23297781|gb|AAN13024.1| unknown protein [Arabidopsis
thaliana]
Length = 469
Score = 127 bits (319), Expect = 1e-28
Identities = 59/115 (51%), Positives = 76/115 (65%)
Frame = -3
Query: 597 RYCRFVYCNDIVPRLPYDDKDLLFKHFGVCLFFNRRYELRVLEEEPNPNYFSPWCVIPMI 418
RY R VYCNDIVPRLPYDDK L+KHFG+CLF++ Y E+EP+PN + I
Sbjct: 345 RYFRVVYCNDIVPRLPYDDKTFLYKHFGLCLFYDSFYNETKAEDEPDPNPYGLRYKILGH 404
Query: 417 FNAIMEMIRSFTIAYKNGPHYREGWFLFSFRMIGLLIPGLPAHGPQDYINCTLLG 253
A+ E++R T+ Y +GP Y+EGWF FR++GL+IPGL H DY+N LG
Sbjct: 405 VIAVWELVRGLTMGYTHGPDYKEGWFRILFRLMGLVIPGLSDHCMTDYVNSVRLG 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,778,875
Number of Sequences: 1393205
Number of extensions: 12103531
Number of successful extensions: 32940
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 32262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32929
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
