Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009662A_C01 KMC009662A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701423.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.90
ref|NP_180041.1| hypothetical protein; protein id: At2g24650.1 [... 33 1.2
ref|NP_173927.1| DNA-binding protein RAV2, putative; protein id:... 32 2.6
ref|ZP_00119680.1| hypothetical protein [Cytophaga hutchinsonii] 32 4.5
ref|NP_701107.1| hypothetical protein [Plasmodium falciparum 3D7... 31 5.8
>ref|NP_701423.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496590|gb|AAN36147.1|AE014845_2 hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2284
Score = 33.9 bits (76), Expect = 0.90
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Frame = +3
Query: 39 MNNN*LNISINHLNFSNYICYFFKPKTNYVTGSNFHSLAEFSPTRSYTCICRF*RKHVAG 218
MNNN L + N +NY Y + Y G+ H + P ++ I K +
Sbjct: 1531 MNNNILKNDQGNNNMNNYNNYTYN--NIYFNGTVNHG--KMPPVQNGNAIKHMDEKEI-- 1584
Query: 219 DVVYHTSTKLNERCSKTSKKLERFEKVIPGKKNHEINCAVNT--------HGINNKKIPL 374
++ + TK E+ K K+ + K N+E+N +T + INNK IP
Sbjct: 1585 NINLNVPTKKLEK--KNFNKIMNINEETLYKNNNELNYIQSTLHYNQMSDNNINNKMIPA 1642
Query: 375 IHIHE 389
HIH+
Sbjct: 1643 HHIHK 1647
>ref|NP_180041.1| hypothetical protein; protein id: At2g24650.1 [Arabidopsis
thaliana] gi|25412234|pir||C84639 hypothetical protein
At2g24650 [imported] - Arabidopsis thaliana
gi|4572680|gb|AAD23895.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1440
Score = 33.5 bits (75), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 197 KPTDARIGSGWRKFCKRMEIRAGDIVCFRFEKIANIITEV 78
K +D RI GW +F + R GD+V FR+ + N++ V
Sbjct: 53 KLSDRRITDGWEEFVVANDFRIGDVVAFRY--VGNLVFHV 90
Score = 30.8 bits (68), Expect = 7.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 182 RIGSGWRKFCKRMEIRAGDIVCFRFEK 102
R+ GW++F ++R GDIV FR E+
Sbjct: 1007 RLTDGWKEFALSHDLRIGDIVVFRQER 1033
>ref|NP_173927.1| DNA-binding protein RAV2, putative; protein id: At1g25560.1,
supported by cDNA: gi_15810260, supported by cDNA:
gi_20259538 [Arabidopsis thaliana]
gi|25403024|pir||A86386 probable DNA-binding protein
RAV2 [imported] - Arabidopsis thaliana
gi|12321505|gb|AAG50808.1|AC079281_10 DNA-binding
protein RAV2, putative [Arabidopsis thaliana]
gi|20259539|gb|AAM13889.1| putative DNA-binding protein
RAV2 [Arabidopsis thaliana] gi|21689705|gb|AAM67474.1|
putative DNA-binding protein RAV2 [Arabidopsis thaliana]
Length = 361
Score = 32.3 bits (72), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -2
Query: 170 GWRKFCKRMEIRAGDIVCF 114
GW +F K +RAGD+VCF
Sbjct: 270 GWSRFVKEKNLRAGDVVCF 288
>ref|ZP_00119680.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 442
Score = 31.6 bits (70), Expect = 4.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 72 HLNFSNYICYFFKPKTNYVTGSNFHSL 152
H F+NY FF+ +TN V GSN SL
Sbjct: 320 HCTFANYSSGFFREETNLVLGSNMGSL 346
>ref|NP_701107.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496171|gb|AAN35831.1|AE014839_40 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 712
Score = 31.2 bits (69), Expect = 5.8
Identities = 23/89 (25%), Positives = 43/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 48 N*LNIS-INHLNFSNYICYFFKPKTNYVTGSNFHSLAEFSPTRSYTCICRF*RKHVA--G 218
N LNI +N +N ++ + P +NY+ N H F+ + S T + ++ K ++ G
Sbjct: 609 NKLNIEHLNSINCGPFMVDIYHPSSNYIIELNAHFQYYFN-SESLTTLSKWRHKFLSQMG 667
Query: 219 DVVYHTSTKLNERCSKTSKKLERFEKVIP 305
V H S ++ ++K+E V+P
Sbjct: 668 YKVIHISYRIWNNLHNDTQKMEYIYSVLP 696
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,140,428
Number of Sequences: 1393205
Number of extensions: 8672832
Number of successful extensions: 22074
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22065
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
