Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009637A_C01 KMC009637A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177823.1| unknown protein; protein id: At1g76970.1 [Arabi... 72 3e-12
ref|NP_564138.1| expressed protein; protein id: At1g21380.1, sup... 68 4e-11
pir||S22534 seed protein B32E - barley (fragment) gi|1345530|emb... 60 1e-08
ref|NP_246145.1| SurA [Pasteurella multocida] gi|12721561|gb|AAK... 37 0.13
gb|AAL55824.1|AF318317_1 unknown [Homo sapiens] 35 0.29
>ref|NP_177823.1| unknown protein; protein id: At1g76970.1 [Arabidopsis thaliana]
gi|25406484|pir||F96798 hypothetical protein F22K20.7
[imported] - Arabidopsis thaliana
gi|2829927|gb|AAC00635.1| Unknown protein [Arabidopsis
thaliana]
Length = 387
Score = 72.0 bits (175), Expect = 3e-12
Identities = 39/67 (58%), Positives = 49/67 (72%)
Frame = -1
Query: 467 PPARFNQRQNFFEEQGMSHSSNWSSSSNDSLLGQTQNLSLNSSTPTKQEKLEDALFKDLL 288
PP+R NQRQ FFE HSS+ S SS + GQT+NLSL SS P K+EK ED LFKDL+
Sbjct: 317 PPSRHNQRQQFFEHH---HSSSGSDSSYE---GQTRNLSLTSSEPQKEEKPEDLLFKDLV 370
Query: 287 DFAKSKT 267
+FAK+++
Sbjct: 371 EFAKTRS 377
>ref|NP_564138.1| expressed protein; protein id: At1g21380.1, supported by cDNA:
gi_14334601, supported by cDNA: gi_17104530 [Arabidopsis
thaliana] gi|25518763|pir||H86346 hypothetical protein
F24J8.3 [imported] - Arabidopsis thaliana
gi|9454570|gb|AAF87893.1|AC015447_3 Unknown protein
[Arabidopsis thaliana] gi|14334602|gb|AAK59479.1|
unknown protein [Arabidopsis thaliana]
gi|17104531|gb|AAL34154.1| unknown protein [Arabidopsis
thaliana]
Length = 506
Score = 68.2 bits (165), Expect = 4e-11
Identities = 37/75 (49%), Positives = 48/75 (63%), Gaps = 7/75 (9%)
Frame = -1
Query: 461 ARFNQRQNFFEEQGMSHSSNWSSSSNDSLLGQTQNLSLNSST-------PTKQEKLEDAL 303
AR N+R +F+ HSS+ S SS D LLGQ++NLSLN + P K +K ED L
Sbjct: 419 ARTNKRPEYFQHNVPQHSSSASESSYDDLLGQSRNLSLNPTASAAPVTPPKKDDKPEDIL 478
Query: 302 FKDLLDFAKSKTKPS 258
FKDL+DFAK++T S
Sbjct: 479 FKDLMDFAKTRTSSS 493
>pir||S22534 seed protein B32E - barley (fragment) gi|1345530|emb|CAA45538.1|
B32E [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 60.1 bits (144), Expect = 1e-08
Identities = 39/83 (46%), Positives = 46/83 (54%), Gaps = 11/83 (13%)
Frame = -1
Query: 467 PPARFNQRQNFFEEQGMSHSSNWSSSSNDSLLGQTQNLSLNS-----------STPTKQE 321
PPAR QRQ FFE+Q N + D +L QT +LSLN ST ++Q
Sbjct: 166 PPARHGQRQQFFEQQHGFPGGN-NEGGYDEMLTQTGSLSLNQRNTENGKSASVSTASRQP 224
Query: 320 KLEDALFKDLLDFAKSKTKPSGP 252
K EDALFKDL+DFAK PS P
Sbjct: 225 KHEDALFKDLVDFAKK--NPSSP 245
>ref|NP_246145.1| SurA [Pasteurella multocida] gi|12721561|gb|AAK03292.1| SurA
[Pasteurella multocida]
Length = 311
Score = 36.6 bits (83), Expect = 0.13
Identities = 26/87 (29%), Positives = 48/87 (54%), Gaps = 3/87 (3%)
Frame = -1
Query: 455 FNQRQNFFEEQGMSHSSNWSSSSNDSLLGQTQNLSLNSSTPTKQEKLEDALFKDLLDFAK 276
+ Q + + QG+S+++ +N L+G+ +N ++ S +E++E AL LL+ AK
Sbjct: 98 YGQLLDALDYQGISYNAYRQQIANQILMGEIRNQAIGQSIDVTREQVE-ALSNQLLNQAK 156
Query: 275 ---SKTKPSGPF*EIVFVLFKVLLLLN 204
++ K S P E+ +L K+ LLN
Sbjct: 157 QAGTEKKISAPQYEVRHILLKLNPLLN 183
>gb|AAL55824.1|AF318317_1 unknown [Homo sapiens]
Length = 400
Score = 35.4 bits (80), Expect = 0.29
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 153 CLCQFSSICPRICG*LSIHCCIYCIYSCILFILIVCS 43
C+C +C R+C +H CI C+Y C+ + VC+
Sbjct: 143 CVCVCVHVCMRVCAHQCLHVCI-CVYVCVCARICVCA 178
Score = 34.3 bits (77), Expect = 0.66
Identities = 18/68 (26%), Positives = 28/68 (40%), Gaps = 3/68 (4%)
Frame = -3
Query: 240 CVCVI*GAAASECCSSDFDLDPSDDPFYDCLCQFSSICPRICG*LSIHCCI---YCIYSC 70
CVCV AS C + C+C +C +C +S+H C+ C+ C
Sbjct: 33 CVCVHVHVCASVCA-------------FVCMCVCVCVCGSVCAFVSVHVCMRVYVCVCIC 79
Query: 69 ILFILIVC 46
+ + VC
Sbjct: 80 VHLYVCVC 87
Score = 31.6 bits (70), Expect = 4.3
Identities = 11/41 (26%), Positives = 20/41 (47%), Gaps = 5/41 (12%)
Frame = -3
Query: 153 CLCQFSSICPRICG*LSIHCCI-----YCIYSCILFILIVC 46
C+C + +C RIC ++ C+ C+Y C+ + C
Sbjct: 163 CICVYVCVCARICVCACVYVCVCISVCACVYVCVHLCVCAC 203
Score = 30.8 bits (68), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 3/42 (7%)
Frame = -3
Query: 159 YDCLCQFSSICPRICG*LSIHCCIY---CIYSCILFILIVCS 43
Y C+C +C R+C +S+ C+Y C+ C+ + VC+
Sbjct: 95 YACVCMCLRLCVRLC--VSVCACVYACICMCICVHVSMYVCA 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,384,325
Number of Sequences: 1393205
Number of extensions: 8675324
Number of successful extensions: 27006
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 25619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26937
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
