Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009625A_C01 KMC009625A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566578.1| expressed protein; protein id: At3g17440.1, sup... 108 4e-23
pir||C96522 F11A17.20 [imported] - Arabidopsis thaliana gi|87789... 108 4e-23
gb|AAM61208.1| unknown [Arabidopsis thaliana] 108 4e-23
ref|NP_175258.2| unknown protein; protein id: At1g48240.1, suppo... 108 4e-23
dbj|BAC16405.1| contains ESTs C19491(E10494),C99236(E10494)~simi... 101 7e-21
>ref|NP_566578.1| expressed protein; protein id: At3g17440.1, supported by cDNA:
114054., supported by cDNA: gi_20466311 [Arabidopsis
thaliana] gi|27805646|sp|Q9LRP1|NS13_ARATH Novel plant
SNARE 13 (AtNPSN13) gi|11994682|dbj|BAB02920.1|
gb|AAD49774.1~gene_id:MTO12.3~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|20466312|gb|AAM20473.1| unknown protein [Arabidopsis
thaliana] gi|24899843|gb|AAN65136.1| unknown protein
[Arabidopsis thaliana]
Length = 269
Score = 108 bits (270), Expect = 4e-23
Identities = 52/59 (88%), Positives = 57/59 (96%)
Frame = -2
Query: 550 KEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKDIPGLAPPAPTRRLLYVR 374
KEIGRQVATDKCIM FLFLIVCGVVAII+VKIVNPNNKDI+DIPGLAPPA +R+LLY+R
Sbjct: 206 KEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYLR 264
>pir||C96522 F11A17.20 [imported] - Arabidopsis thaliana
gi|8778964|gb|AAD49774.2|AC007932_22 F11A17.20
[Arabidopsis thaliana]
Length = 285
Score = 108 bits (270), Expect = 4e-23
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = -2
Query: 550 KEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKDIPGLAPPAPTRRLLYVR 374
KEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNPNNKDI+DIPGLAPPA +R+LLY R
Sbjct: 226 KEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYFR 284
>gb|AAM61208.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 108 bits (270), Expect = 4e-23
Identities = 52/59 (88%), Positives = 57/59 (96%)
Frame = -2
Query: 550 KEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKDIPGLAPPAPTRRLLYVR 374
KEIGRQVATDKCIM FLFLIVCGVVAII+VKIVNPNNKDI+DIPGLAPPA +R+LLY+R
Sbjct: 205 KEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYLR 263
>ref|NP_175258.2| unknown protein; protein id: At1g48240.1, supported by cDNA:
gi_19569610 [Arabidopsis thaliana]
gi|27805645|sp|Q9LNH6|NS12_ARATH Novel plant SNARE 12
(AtNPSN12) gi|8778508|gb|AAF79516.1|AC023673_4 F21D18.4
[Arabidopsis thaliana]
gi|19569611|gb|AAL92119.1|AF487545_1 NPSN12 [Arabidopsis
thaliana] gi|26449739|dbj|BAC41993.1| unknown protein
[Arabidopsis thaliana] gi|28950823|gb|AAO63335.1|
At1g48240 [Arabidopsis thaliana]
Length = 265
Score = 108 bits (270), Expect = 4e-23
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = -2
Query: 550 KEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKDIPGLAPPAPTRRLLYVR 374
KEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNPNNKDI+DIPGLAPPA +R+LLY R
Sbjct: 206 KEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYFR 264
>dbj|BAC16405.1| contains ESTs C19491(E10494),C99236(E10494)~similar to vesicle
soluble NSF attachment protein receptor [Oryza sativa
(japonica cultivar-group)]
Length = 266
Score = 101 bits (251), Expect = 7e-21
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = -2
Query: 550 KEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKDIPGLAPPAPTRRLLYVRT 371
KEIGRQVATDKCIM FLFLIVCGV+AIIVVKIVNP+NK+I+DIPGLAPPA R+LL + +
Sbjct: 203 KEIGRQVATDKCIMAFLFLIVCGVIAIIVVKIVNPHNKNIRDIPGLAPPAQNRKLLSIES 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,139,764
Number of Sequences: 1393205
Number of extensions: 11431988
Number of successful extensions: 28288
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 27143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28278
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
