Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009623A_C01 KMC009623A_c01
(425 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92155.1| glycine-rich protein [Citrus unshiu] 85 2e-16
ref|NP_565325.1| expressed protein; protein id: At2g05380.1, sup... 82 1e-15
gb|AAD11798.1| glycine-rich protein 3 short isoform [Arabidopsis... 82 2e-15
gb|AAL67434.1|AF458408_1 glycine-rich protein [Brassica oleracea] 82 2e-15
gb|AAM20648.1| unknown protein [Arabidopsis thaliana] 81 3e-15
>dbj|BAA92155.1| glycine-rich protein [Citrus unshiu]
Length = 127
Score = 84.7 bits (208), Expect = 2e-16
Identities = 37/59 (62%), Positives = 42/59 (70%)
Frame = -3
Query: 423 GGGGGRGHGGRGGGGGRGGGGGGYCRHGCCDHGYRGSCRRCCHYAGEAVAAQTADKTQN 247
G GGG G+GG GG GG GG GGG+CR+GCC HGY G C RCC YAGEAV + + QN
Sbjct: 70 GYGGGGGYGGGGGYGGGGGHGGGHCRYGCCGHGYHGGC-RCCTYAGEAVDTEPETEPQN 127
>ref|NP_565325.1| expressed protein; protein id: At2g05380.1, supported by cDNA:
gi_15146251, supported by cDNA: gi_20466661, supported
by cDNA: gi_4206766 [Arabidopsis thaliana]
gi|15146252|gb|AAK83609.1| At2g05380/F16J10.7
[Arabidopsis thaliana] gi|20198244|gb|AAD32899.2|
expressed protein [Arabidopsis thaliana]
gi|24797028|gb|AAN64526.1| At2g05380/F16J10.7
[Arabidopsis thaliana]
Length = 116
Score = 82.4 bits (202), Expect = 1e-15
Identities = 39/62 (62%), Positives = 40/62 (63%), Gaps = 9/62 (14%)
Frame = -3
Query: 423 GGGGGRGHGGRG---------GGGGRGGGGGGYCRHGCCDHGYRGSCRRCCHYAGEAVAA 271
GGGG GHGG G GGGGR GGGG YCRHGCC GY G C RCC YAGEAV
Sbjct: 54 GGGGHGGHGGGGYQGGGGRYQGGGGRQGGGGSYCRHGCCYKGYHG-CSRCCSYAGEAVQT 112
Query: 270 QT 265
Q+
Sbjct: 113 QS 114
>gb|AAD11798.1| glycine-rich protein 3 short isoform [Arabidopsis thaliana]
Length = 116
Score = 82.0 bits (201), Expect = 2e-15
Identities = 39/61 (63%), Positives = 39/61 (63%), Gaps = 9/61 (14%)
Frame = -3
Query: 423 GGGGGRGHGGRG---------GGGGRGGGGGGYCRHGCCDHGYRGSCRRCCHYAGEAVAA 271
GGGG GHGG G GGGGR GGGG YCRHGCC GY G C RCC YAGEAV
Sbjct: 54 GGGGHGGHGGGGYQGGGGRYQGGGGRQGGGGSYCRHGCCYKGYHG-CSRCCSYAGEAVQT 112
Query: 270 Q 268
Q
Sbjct: 113 Q 113
>gb|AAL67434.1|AF458408_1 glycine-rich protein [Brassica oleracea]
Length = 124
Score = 81.6 bits (200), Expect = 2e-15
Identities = 38/54 (70%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = -3
Query: 423 GGGGGRGHGGRGGGGGRGGGG--GGYCRHGCCDHGYRGSCRRCCHYAGEAVAAQ 268
GGGG G GG GGG GGGG GGYCRHGCC GYRG C RCC YAGEAV Q
Sbjct: 69 GGGGYNGGGGYNGGGHHGGGGRGGGYCRHGCCYRGYRG-CSRCCSYAGEAVQTQ 121
>gb|AAM20648.1| unknown protein [Arabidopsis thaliana]
Length = 116
Score = 80.9 bits (198), Expect = 3e-15
Identities = 38/62 (61%), Positives = 40/62 (64%), Gaps = 9/62 (14%)
Frame = -3
Query: 423 GGGGGRGHGGRG---------GGGGRGGGGGGYCRHGCCDHGYRGSCRRCCHYAGEAVAA 271
GGGG GHGG G GGGGR GGGG YCRHGCC GY G C RCC YAG+AV
Sbjct: 54 GGGGHGGHGGGGYQGGGGRYQGGGGRQGGGGSYCRHGCCYKGYHG-CSRCCSYAGKAVQT 112
Query: 270 QT 265
Q+
Sbjct: 113 QS 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,711,028
Number of Sequences: 1393205
Number of extensions: 11435297
Number of successful extensions: 638161
Number of sequences better than 10.0: 11161
Number of HSP's better than 10.0 without gapping: 91757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353661
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
