Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009621A_C01 KMC009621A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_621817.1| hypothetical protein [Thermoanaerobacter tengco... 34 1.4
ref|NP_568577.1| DegP protease; protein id: At5g40200.1, support... 33 2.5
dbj|BAC42370.1| unknown protein [Arabidopsis thaliana] 33 3.2
ref|NP_718657.1| TPR domain protein [Shewanella oneidensis MR-1]... 32 4.2
ref|NP_510052.1| Putative cytoplasmic protein, nematode specific... 32 5.5
>ref|NP_621817.1| hypothetical protein [Thermoanaerobacter tengcongensis]
gi|20515094|gb|AAM23421.1| hypothetical protein
[Thermoanaerobacter tengcongensis]
Length = 298
Score = 33.9 bits (76), Expect = 1.4
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 69 KLQRGKKRKKVQAQTDKEQGKNMKQGNKTEPNLP-TNT--RGQVSKTREXMQPLSVSHPS 239
K+Q+ +K+ + + DKE K + KT+P + TNT + +V+K ++ Q + V P
Sbjct: 184 KIQKTEKKNLKEPKDDKENDKKQDKKLKTKPPVKITNTEPKNEVTKDKQEKQKIKVEVPV 243
Query: 240 REHRI*NPTEEA-KQTSPIPHQ*NPRELIKAR 332
+I P +E K+T+ P + N + K++
Sbjct: 244 ---KITKPDKEVQKETTEKPKEENSEKQEKSK 272
>ref|NP_568577.1| DegP protease; protein id: At5g40200.1, supported by cDNA:
gi_15028146 [Arabidopsis thaliana]
gi|10177507|dbj|BAB10901.1| serine protease-like protein
[Arabidopsis thaliana] gi|15028147|gb|AAK76697.1|
putative DegP protease [Arabidopsis thaliana]
gi|23296815|gb|AAN13177.1| putative DegP protease
[Arabidopsis thaliana]
Length = 592
Score = 33.1 bits (74), Expect = 2.5
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 7/78 (8%)
Frame = +1
Query: 82 EKRERKYKHRQTKNRERT*NRGTKQSLICQQIPEARCPRQGSXCNPSQSLTRQG------ 243
EKR RK+K + + E + S +P++ P S NPS S +G
Sbjct: 5 EKRGRKHKRQDASSAENAGGEVKEASANEASLPQSPEPVSASEANPSPSRRSRGRGKKRR 64
Query: 244 -NIESEIPQKRLSKPVQS 294
N ESE +R S P +S
Sbjct: 65 LNNESEAGNQRTSSPERS 82
>dbj|BAC42370.1| unknown protein [Arabidopsis thaliana]
Length = 680
Score = 32.7 bits (73), Expect = 3.2
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Frame = +1
Query: 28 KCINKVEGYFNPELNYKGEKRERKYKHRQTKNRERT*NRG----------TKQSLICQQI 177
+C ++ L++KG +RE + +NR R +RG +Q C+QI
Sbjct: 100 ECYSQSNSVLGKSLSWKGRRREPGSSDKIKENRNRRHHRGFECAYFSSPRHRQGRSCRQI 159
Query: 178 PEARCPRQGSXCNPSQSLTRQGNIESEIPQKRLSKPVQSHINEIRGS*LKQGNE 339
R+G N S+ R GN PV+ N +R L Q N+
Sbjct: 160 ------RRGEARNVSEDYKRDGN------------PVEFQENGVRTEMLPQKND 195
>ref|NP_718657.1| TPR domain protein [Shewanella oneidensis MR-1]
gi|24349234|gb|AAN56101.1|AE015746_5 TPR domain protein
[Shewanella oneidensis MR-1]
Length = 679
Score = 32.3 bits (72), Expect = 4.2
Identities = 20/70 (28%), Positives = 35/70 (49%)
Frame = +3
Query: 69 KLQRGKKRKKVQAQTDKEQGKNMKQGNKTEPNLPTNTRGQVSKTREXMQPLSVSHPSREH 248
K +G + ++ Q Q D++QG+N +QG + E N Q + E + S S +
Sbjct: 466 KPSQGDQNQQGQDQNDQQQGQNQQQGQQKEQQSSPNDPSQEQQAGEKQTQDNTS--SAKD 523
Query: 249 RI*NPTEEAK 278
+ NP +EA+
Sbjct: 524 KQDNPEQEAQ 533
>ref|NP_510052.1| Putative cytoplasmic protein, nematode specific [Caenorhabditis
elegans] gi|7509060|pir||T18907 hypothetical protein
W06D11.1 - Caenorhabditis elegans
gi|3873896|emb|CAA93530.1| Hypothetical protein W06D11.1
[Caenorhabditis elegans] gi|3880525|emb|CAA93539.1|
Hypothetical protein W06D11.1 [Caenorhabditis elegans]
Length = 236
Score = 32.0 bits (71), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = -1
Query: 193 DTWPLVFVGRLGSVLFPCFMFFP 125
D +P VF+G+ GS+ +PC F P
Sbjct: 126 DDYPAVFIGKEGSIYYPCDSFIP 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,171,011
Number of Sequences: 1393205
Number of extensions: 10536643
Number of successful extensions: 28184
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28112
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
