Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009607A_C01 KMC009607A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199332.1| putative protein; protein id: At5g45190.1 [Arab... 44 0.001
ref|NP_189213.2| protein kinase, putative; protein id: At3g25840... 35 0.61
dbj|BAB01182.1| protein kinase-like protein [Arabidopsis thaliana] 35 0.61
gb|EAA22016.1| asparagine-rich protein [Plasmodium yoelii yoelii] 33 2.3
ref|NP_443084.1| hypothetical zinc finger protein MGC2396 [Homo ... 32 5.1
>ref|NP_199332.1| putative protein; protein id: At5g45190.1 [Arabidopsis thaliana]
gi|9759604|dbj|BAB11392.1| contains similarity to
cyclin~gene_id:K18C1.7 [Arabidopsis thaliana]
Length = 583
Score = 43.5 bits (101), Expect = 0.001
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = -3
Query: 495 EADLSAVEEGEVSALDDIDLGPKSSNQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYI 316
+ ++ EEGE+ + ++ P ++KRK+ S P+ EGK+RHN +G H
Sbjct: 509 KGEVKNTEEGEMV---NNNVSPMMHSRKRKMGSPPEKQSEGKRRHNSENGEESH------ 559
Query: 315 EDRNKVNRLGHAERDSKRHIQEN 247
+ H +R+ +RH QEN
Sbjct: 560 --KTSRGSSHHGDREHRRHSQEN 580
>ref|NP_189213.2| protein kinase, putative; protein id: At3g25840.1, supported by
cDNA: gi_20260157 [Arabidopsis thaliana]
gi|20260158|gb|AAM12977.1| protein kinase-like protein
[Arabidopsis thaliana] gi|22136222|gb|AAM91189.1|
protein kinase-like protein [Arabidopsis thaliana]
Length = 935
Score = 34.7 bits (78), Expect = 0.61
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 429 KSSNQKRKVESSPDNFVEG----KKRHNYGSGSTHHNRIDYIEDRNKVNRLGHAERDSKR 262
+S + R+ E+S F E + RH+ S HH+R+D + + +R G E + ++
Sbjct: 188 RSKSHDRERETSRSRFAEDEFSDRGRHHDSSRDYHHDRVDSVRTEERYHRRGRYEENDRQ 247
Query: 261 HIQE 250
+ +E
Sbjct: 248 YSRE 251
>dbj|BAB01182.1| protein kinase-like protein [Arabidopsis thaliana]
Length = 921
Score = 34.7 bits (78), Expect = 0.61
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 429 KSSNQKRKVESSPDNFVEG----KKRHNYGSGSTHHNRIDYIEDRNKVNRLGHAERDSKR 262
+S + R+ E+S F E + RH+ S HH+R+D + + +R G E + ++
Sbjct: 188 RSKSHDRERETSRSRFAEDEFSDRGRHHDSSRDYHHDRVDSVRTEERYHRRGRYEENDRQ 247
Query: 261 HIQE 250
+ +E
Sbjct: 248 YSRE 251
>gb|EAA22016.1| asparagine-rich protein [Plasmodium yoelii yoelii]
Length = 828
Score = 32.7 bits (73), Expect = 2.3
Identities = 19/80 (23%), Positives = 37/80 (45%), Gaps = 13/80 (16%)
Frame = -3
Query: 447 DIDLGPKSSNQKRKV-ESSPDNFVEGKKRHNYGSGSTHHNR------------IDYIEDR 307
+I L P + N+ RK+ + + ++ G GS HN ++ +D+
Sbjct: 468 NIALNPTTQNKNRKLGKKEKKKHTDTRRISRKGKGSRTHNNSAKRVTKKNNLSVNSFDDK 527
Query: 306 NKVNRLGHAERDSKRHIQEN 247
K ++ H ++K+HIQ+N
Sbjct: 528 VKTDKYQHKNLENKKHIQKN 547
>ref|NP_443084.1| hypothetical zinc finger protein MGC2396 [Homo sapiens]
gi|14286276|gb|AAH08936.1|AAH08936 Similar to
DNA-binding protein [Homo sapiens]
Length = 216
Score = 31.6 bits (70), Expect = 5.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 420 NQKRKVESSPDNFVEGKKRHNYGSGSTHHNRIDYIEDRNKVNRLGHA 280
+++R E P ++EG K N S T H +ID E K G A
Sbjct: 163 HKRRHTEKKPLKYIEGDKAFNQSSTHTTHKKIDTGEKPYKCEECGKA 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,810,192
Number of Sequences: 1393205
Number of extensions: 9144371
Number of successful extensions: 26687
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26667
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
