Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009580A_C01 KMC009580A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02677.1| dbj|BAA81871.1~gene_id:MSL1.15~strong similarity... 92 4e-18
ref|NP_188232.1| putative protein disulfide isomerase; protein i... 92 4e-18
dbj|BAA81871.1| ESTs D22477(C11179),AU075323(C11179) corresponds... 84 8e-16
ref|NP_175636.1| protein disulfide isomerase precursor, putative... 65 4e-10
gb|AAO26314.1| protein disulphide isomerase [Elaeis guineensis] 47 2e-04
>dbj|BAB02677.1| dbj|BAA81871.1~gene_id:MSL1.15~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 519
Score = 92.0 bits (227), Expect = 4e-18
Identities = 44/67 (65%), Positives = 53/67 (78%)
Frame = -2
Query: 532 NLKFAKIDGSANEHPQLQVNDYPTLLLYRADDKSNPIKLSTKSSLKELAASINKHLKVKS 353
NL FA+ID SANEHP+L V+DYPT+LLY+ +K NP+KLSTKSS K++A INK LK K
Sbjct: 453 NLVFARIDASANEHPKLTVDDYPTILLYKTGEKENPLKLSTKSSAKDMAVLINKELKWKD 512
Query: 352 QGVKDEL 332
Q KDEL
Sbjct: 513 QSGKDEL 519
>ref|NP_188232.1| putative protein disulfide isomerase; protein id: At3g16110.1
[Arabidopsis thaliana]
Length = 533
Score = 92.0 bits (227), Expect = 4e-18
Identities = 44/67 (65%), Positives = 53/67 (78%)
Frame = -2
Query: 532 NLKFAKIDGSANEHPQLQVNDYPTLLLYRADDKSNPIKLSTKSSLKELAASINKHLKVKS 353
NL FA+ID SANEHP+L V+DYPT+LLY+ +K NP+KLSTKSS K++A INK LK K
Sbjct: 467 NLVFARIDASANEHPKLTVDDYPTILLYKTGEKENPLKLSTKSSAKDMAVLINKELKWKD 526
Query: 352 QGVKDEL 332
Q KDEL
Sbjct: 527 QSGKDEL 533
>dbj|BAA81871.1| ESTs D22477(C11179),AU075323(C11179) corresponds to a region of the
predicted gene.~Similar to Rabbit multifunctional
thyroid hormone binding protein mRNA, complete
cds.(J05602) [Oryza sativa (japonica cultivar-group)]
Length = 510
Score = 84.3 bits (207), Expect = 8e-16
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 7/74 (9%)
Frame = -2
Query: 532 NLKFAKIDGSANEHPQLQVNDYPTLLLYRADDKSNPIKLSTKSSLKELAASINKHLKV-- 359
NLKFA+ID S NEHP+LQ+N+YPTLLLY A DKSNPIKLS KS+LK++A + + L++
Sbjct: 437 NLKFARIDASVNEHPKLQINNYPTLLLYPAQDKSNPIKLSKKSNLKDMAKFVKEKLQIAD 496
Query: 358 -----KSQGVKDEL 332
VKDEL
Sbjct: 497 VETVAAGDIVKDEL 510
>ref|NP_175636.1| protein disulfide isomerase precursor, putative; protein id:
At1g52260.1 [Arabidopsis thaliana]
gi|25405537|pir||F96562 hypothetical protein F19K6.17
[imported] - Arabidopsis thaliana
gi|12323134|gb|AAG51554.1|AC037424_19 protein disulfide
isomerase precursor, putative; 72379-69727 [Arabidopsis
thaliana]
Length = 546
Score = 65.5 bits (158), Expect = 4e-10
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 11/78 (14%)
Frame = -2
Query: 532 NLKFAKIDGSANEHPQLQVND-YPTLLLYRADDKSNP---------IKLSTKSSLKELAA 383
NL FA+ID SANEH +LQV+D YP +LLY++ +K P +KLSTK S K++A
Sbjct: 469 NLVFARIDASANEHTKLQVDDKYPIILLYKSGEKEKPCILPGFHLQLKLSTKLSAKDIAV 528
Query: 382 SINKH-LKVKSQGVKDEL 332
IN+ LK K+ KDEL
Sbjct: 529 FINEELLKPKNGSAKDEL 546
>gb|AAO26314.1| protein disulphide isomerase [Elaeis guineensis]
Length = 447
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -2
Query: 532 NLKFAKIDGSANEHPQLQVNDYPTLLLYRADDKS-NPIKLSTKSSLKELAASINKHLKV 359
+L AK+DG++NEHP+ +V+ +PTLL + A +KS +P+ + T ++ I KH +
Sbjct: 353 SLVIAKMDGTSNEHPRAKVDGFPTLLFFPAGNKSFDPVTVDTDRTVVAFYKFIKKHAAI 411
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,066,597
Number of Sequences: 1393205
Number of extensions: 7251747
Number of successful extensions: 13931
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 13671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13928
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
