Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009547A_C01 KMC009547A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199115.1| 26S proteasome AAA-ATPase subunit RPT4a; protei... 136 2e-31
dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPa... 135 5e-31
dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPa... 135 6e-31
ref|NP_175120.1| 26S proteasome regulatory particle triple-A ATP... 135 6e-31
dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum... 132 3e-30
>ref|NP_199115.1| 26S proteasome AAA-ATPase subunit RPT4a; protein id: At5g43010.1,
supported by cDNA: gi_13937182, supported by cDNA:
gi_18700261, supported by cDNA: gi_6652883 [Arabidopsis
thaliana] gi|6652884|gb|AAF22524.1|AF123393_1 26S
proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana] gi|9758590|dbj|BAB09203.1| 26S proteasome
AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21
[Arabidopsis thaliana] gi|18700262|gb|AAL77741.1|
AT5g43010/MBD2_21 [Arabidopsis thaliana]
Length = 399
Score = 136 bits (343), Expect = 2e-31
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -3
Query: 651 GEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 472
GEIDYEA+VKLAEGFNGADLRNICTEAGM AIRAERDYVIHEDFMKAVRKL+EAKKLESS
Sbjct: 330 GEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESS 389
Query: 471 SHYNADFGKD 442
SHYNADFGK+
Sbjct: 390 SHYNADFGKE 399
>dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
sativa (japonica cultivar-group)]
Length = 377
Score = 135 bits (340), Expect = 5e-31
Identities = 64/70 (91%), Positives = 70/70 (99%)
Frame = -3
Query: 651 GEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 472
GEIDYEAVVKLAEGFNGADLRN+CTEAGM+AIRAERDYVIHEDFMKAVRKLN+AKKLESS
Sbjct: 308 GEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESS 367
Query: 471 SHYNADFGKD 442
+HY+ADFGK+
Sbjct: 368 AHYSADFGKE 377
>dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa (japonica cultivar-group)]
Length = 400
Score = 135 bits (339), Expect = 6e-31
Identities = 63/70 (90%), Positives = 70/70 (100%)
Frame = -3
Query: 651 GEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 472
GEIDYEAVVKLAEGFNGADLRN+CTEAGM+AIRAERDYV+HEDFMKAVRKLN+AKKLESS
Sbjct: 331 GEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVVHEDFMKAVRKLNDAKKLESS 390
Query: 471 SHYNADFGKD 442
+HY+ADFGK+
Sbjct: 391 AHYSADFGKE 400
>ref|NP_175120.1| 26S proteasome regulatory particle triple-A ATPase subunit4,
putative; protein id: At1g45000.1, supported by cDNA:
gi_17065265 [Arabidopsis thaliana]
gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis
thaliana] gi|17065266|gb|AAL32787.1| similar to 26S
proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana] gi|21387177|gb|AAM47992.1| 26S proteasome
AAA-ATPase subunit RPT4a-like protein [Arabidopsis
thaliana]
Length = 399
Score = 135 bits (339), Expect = 6e-31
Identities = 65/70 (92%), Positives = 68/70 (96%)
Frame = -3
Query: 651 GEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 472
GEIDYEA+VKL EGFNGADLRNICTEAGM AIRAERDYVIHEDFMKAVRKL+EAKKLESS
Sbjct: 330 GEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESS 389
Query: 471 SHYNADFGKD 442
SHYNADFGK+
Sbjct: 390 SHYNADFGKE 399
>dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
Length = 398
Score = 132 bits (333), Expect = 3e-30
Identities = 62/70 (88%), Positives = 68/70 (96%)
Frame = -3
Query: 651 GEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 472
GEIDYEA +KLAEGFNGAD+RN+CTEAGM AIRAERDYVIHEDFMKAVRKLNEAKKLESS
Sbjct: 329 GEIDYEAAIKLAEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKAVRKLNEAKKLESS 388
Query: 471 SHYNADFGKD 442
+HY+ADFGK+
Sbjct: 389 AHYSADFGKE 398
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,772,805
Number of Sequences: 1393205
Number of extensions: 10556786
Number of successful extensions: 22296
Number of sequences better than 10.0: 555
Number of HSP's better than 10.0 without gapping: 21718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22292
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
