Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009540A_C01 KMC009540A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192645.1| hypothetical protein; protein id: At4g09060.1 [... 65 3e-10
pir||T33170 hypothetical protein M01B12.4 - Caenorhabditis elegans 39 0.034
ref|NP_740823.1| Putative nuclear protein family member, with 2 ... 39 0.034
ref|NP_740825.1| Putative nuclear protein family member, with 2 ... 39 0.034
ref|NP_740824.1| Putative nuclear protein family member, with 2 ... 39 0.034
>ref|NP_192645.1| hypothetical protein; protein id: At4g09060.1 [Arabidopsis
thaliana] gi|25407475|pir||F85091 hypothetical protein
AT4g09060 [imported] - Arabidopsis thaliana
gi|7267549|emb|CAB78030.1| hypothetical protein
[Arabidopsis thaliana] gi|21689641|gb|AAM67442.1|
unknown protein [Arabidopsis thaliana]
Length = 341
Score = 65.5 bits (158), Expect = 3e-10
Identities = 33/73 (45%), Positives = 53/73 (72%)
Frame = -3
Query: 455 LDEKNKKILKQLKEGKHPGSGGKHTSSASAKSNKRKTSPRTTSPMERKIDFGELESARQP 276
LD++N+K+L+Q + S K+ +SASAKSNKRK+ +SP+E++++F E +R+P
Sbjct: 268 LDKENRKLLRQQQSPLC--SADKNRNSASAKSNKRKSPKTMSSPVEKRLEFSSPEISRKP 325
Query: 275 LSPLRHNSPDCRM 237
LSP+ +NSPD +M
Sbjct: 326 LSPVWNNSPDSKM 338
>pir||T33170 hypothetical protein M01B12.4 - Caenorhabditis elegans
Length = 719
Score = 38.5 bits (88), Expect = 0.034
Identities = 21/66 (31%), Positives = 35/66 (52%)
Frame = -3
Query: 431 LKQLKEGKHPGSGGKHTSSASAKSNKRKTSPRTTSPMERKIDFGELESARQPLSPLRHNS 252
+KQ G + +T++ S+ +N+R R PM RK+ FG+ E+AR+ SP+
Sbjct: 218 MKQPARGASTSAARPNTATPSSSNNRRSMDQRKP-PMPRKLPFGKPEAARKSASPVAAQE 276
Query: 251 PDCRMV 234
P +V
Sbjct: 277 PTAPVV 282
>ref|NP_740823.1| Putative nuclear protein family member, with 2 coiled coil-4
domains, nematode specific (69.2 kD) [Caenorhabditis
elegans] gi|16950443|gb|AAC17562.3| Hypothetical protein
M01B12.4a [Caenorhabditis elegans]
Length = 634
Score = 38.5 bits (88), Expect = 0.034
Identities = 21/66 (31%), Positives = 35/66 (52%)
Frame = -3
Query: 431 LKQLKEGKHPGSGGKHTSSASAKSNKRKTSPRTTSPMERKIDFGELESARQPLSPLRHNS 252
+KQ G + +T++ S+ +N+R R PM RK+ FG+ E+AR+ SP+
Sbjct: 218 MKQPARGASTSAARPNTATPSSSNNRRSMDQRKP-PMPRKLPFGKPEAARKSASPVAAQE 276
Query: 251 PDCRMV 234
P +V
Sbjct: 277 PTAPVV 282
>ref|NP_740825.1| Putative nuclear protein family member, with 2 coiled coil-4
domains, nematode specific [Caenorhabditis elegans]
gi|21913061|gb|AAM81100.1|AF067624_5 Hypothetical
protein M01B12.4c [Caenorhabditis elegans]
Length = 620
Score = 38.5 bits (88), Expect = 0.034
Identities = 21/66 (31%), Positives = 35/66 (52%)
Frame = -3
Query: 431 LKQLKEGKHPGSGGKHTSSASAKSNKRKTSPRTTSPMERKIDFGELESARQPLSPLRHNS 252
+KQ G + +T++ S+ +N+R R PM RK+ FG+ E+AR+ SP+
Sbjct: 218 MKQPARGASTSAARPNTATPSSSNNRRSMDQRKP-PMPRKLPFGKPEAARKSASPVAAQE 276
Query: 251 PDCRMV 234
P +V
Sbjct: 277 PTAPVV 282
>ref|NP_740824.1| Putative nuclear protein family member, with 2 coiled coil-4
domains, nematode specific [Caenorhabditis elegans]
gi|20198863|gb|AAM15592.1|AF067624_4 Hypothetical
protein M01B12.4b [Caenorhabditis elegans]
Length = 644
Score = 38.5 bits (88), Expect = 0.034
Identities = 21/66 (31%), Positives = 35/66 (52%)
Frame = -3
Query: 431 LKQLKEGKHPGSGGKHTSSASAKSNKRKTSPRTTSPMERKIDFGELESARQPLSPLRHNS 252
+KQ G + +T++ S+ +N+R R PM RK+ FG+ E+AR+ SP+
Sbjct: 228 MKQPARGASTSAARPNTATPSSSNNRRSMDQRKP-PMPRKLPFGKPEAARKSASPVAAQE 286
Query: 251 PDCRMV 234
P +V
Sbjct: 287 PTAPVV 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,282,934
Number of Sequences: 1393205
Number of extensions: 7598331
Number of successful extensions: 24938
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 24186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24919
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
