Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009539A_C01 KMC009539A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03357.1| unnamed protein product [Oryza sativa (japonica ... 133 1e-30
ref|NP_196928.1| putative protein; protein id: At5g14240.1, supp... 122 2e-27
gb|AAM65214.1| unknown [Arabidopsis thaliana] 122 3e-27
ref|NP_524032.2| viral iap associated factor CG18593-PA gi|21483... 39 0.027
gb|AAG21889.1|AF110513_1 IAP-associated factor VIAF1 [Drosophila... 39 0.027
>dbj|BAB03357.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 251
Score = 133 bits (334), Expect = 1e-30
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Frame = -3
Query: 513 PDRNLPTLLVYNNGAVKGNYVGLHSFG-RRCTPEGVALVLCQSDPVLNDGQSGNEQSREA 337
PDRN+PT+LVYNN AVKG YVGL FG +RCTPE VAL LCQS+PVLNDGQSG + SR+
Sbjct: 165 PDRNVPTILVYNNSAVKGTYVGLQKFGGKRCTPESVALALCQSEPVLNDGQSGGDSSRDN 224
Query: 336 VIEGVRKRFIEKVVLDHEEQEDDSTSD 256
VIEGVR++FIEKVV HEE+E+D SD
Sbjct: 225 VIEGVRRKFIEKVVAQHEEREEDDDSD 251
>ref|NP_196928.1| putative protein; protein id: At5g14240.1, supported by cDNA:
37589. [Arabidopsis thaliana] gi|11357553|pir||T48597
hypothetical protein F18O22.30 - Arabidopsis thaliana
gi|7573449|emb|CAB87763.1| putative protein [Arabidopsis
thaliana] gi|24030416|gb|AAN41366.1| unknown protein
[Arabidopsis thaliana]
Length = 256
Score = 122 bits (306), Expect = 2e-27
Identities = 57/83 (68%), Positives = 74/83 (88%), Gaps = 1/83 (1%)
Frame = -3
Query: 513 PDRNLPTLLVYNNGAVKGNYVGLHSFGRRCTPEGVALVLCQSDPVLNDGQSG-NEQSREA 337
PD NLPTLLVY++GA+KG +VGL SFGRRCTPE VAL+LCQS+PVLNDG+ G ++ SREA
Sbjct: 167 PDCNLPTLLVYHHGAIKGTHVGLKSFGRRCTPESVALLLCQSEPVLNDGKGGDDDSSREA 226
Query: 336 VIEGVRKRFIEKVVLDHEEQEDD 268
V+ GVR++FIE+VV DHE++++D
Sbjct: 227 VMAGVRRQFIERVVKDHEDKDND 249
>gb|AAM65214.1| unknown [Arabidopsis thaliana]
Length = 256
Score = 122 bits (305), Expect = 3e-27
Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
Frame = -3
Query: 513 PDRNLPTLLVYNNGAVKGNYVGLHSFGRRCTPEGVALVLCQSDPVLNDGQSG-NEQSREA 337
PD NLPTLLVY++GA+KG +VGL SFGRRCTPE VAL+LCQS+PVLNDG+ G ++ SREA
Sbjct: 167 PDCNLPTLLVYHHGAIKGTHVGLKSFGRRCTPESVALLLCQSEPVLNDGKGGDDDSSREA 226
Query: 336 VIEGVRKRFIEKVVLDHEEQEDD 268
V+ GVR++FIE+VV DHE+ ++D
Sbjct: 227 VMAGVRRQFIERVVKDHEDNDND 249
>ref|NP_524032.2| viral iap associated factor CG18593-PA gi|21483284|gb|AAM52617.1|
GH10422p [Drosophila melanogaster]
gi|28380540|gb|AAF49974.2| CG18593-PA [Drosophila
melanogaster]
Length = 240
Score = 39.3 bits (90), Expect = 0.027
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -3
Query: 513 PDRNLPTLLVYNNGAVKGNYVG-LHSFGRRCTPEGVALVLCQSDPVLNDGQSGNEQSREA 337
P++NLPT+ +Y+ GA++ Y+G L G + T E + +L Q+ V +
Sbjct: 167 PEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAEELEFMLGQAGAVPTE----------- 215
Query: 336 VIEGVRKRFIEKVVLDHEEQEDD 268
+ E R + +K++ D E++ D
Sbjct: 216 ITEDPRPQIRDKMLADLEDKSSD 238
>gb|AAG21889.1|AF110513_1 IAP-associated factor VIAF1 [Drosophila melanogaster]
Length = 240
Score = 39.3 bits (90), Expect = 0.027
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -3
Query: 513 PDRNLPTLLVYNNGAVKGNYVG-LHSFGRRCTPEGVALVLCQSDPVLNDGQSGNEQSREA 337
P++NLPT+ +Y+ GA++ Y+G L G + T E + +L Q+ V +
Sbjct: 167 PEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAEELEFMLGQAGAVPTE----------- 215
Query: 336 VIEGVRKRFIEKVVLDHEEQEDD 268
+ E R + +K++ D E++ D
Sbjct: 216 ITEDPRPQIRDKMLADLEDKSSD 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,531,356
Number of Sequences: 1393205
Number of extensions: 8411392
Number of successful extensions: 32159
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32147
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
