Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009535A_C01 KMC009535A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89458.1| OSJNBb0021A09.10 [Oryza sativa (japonica cultiva... 55 3e-07
dbj|BAB91728.1| P0671D01.4 [Oryza sativa (japonica cultivar-grou... 46 2e-04
dbj|BAC16150.1| hypothetical protein~similar to Arabidopsis thal... 45 4e-04
emb|CAD39846.1| OSJNBb0072N21.12 [Oryza sativa (japonica cultiva... 45 4e-04
dbj|BAB60933.1| P0682B08.3 [Oryza sativa (japonica cultivar-grou... 39 0.028
>dbj|BAB89458.1| OSJNBb0021A09.10 [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 55.5 bits (132), Expect = 3e-07
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Frame = -2
Query: 472 CLIYHMRHKDISPMLIRDFVT--KFTFVGVGIKRFMGAL-EFYGLVDFNYVDVAKLAK-- 308
CL++ + H D P + DF+ +FTFVGVGI + L E Y L N VD+ LA
Sbjct: 376 CLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQT 435
Query: 307 -AKWPEKYDSLPELHCLAKDLGIKKSVDVKRPCLWKSDELTTTQIESACLDAFVSYKLGK 131
K + L L D+ ++K V R W S +LT Q+ AC DAF S+++G+
Sbjct: 436 IGKPALRSTGLQGLVWEVMDVWMEKPHHV-RVSAWDSRQLTLDQVMYACADAFASFEVGR 494
Query: 130 EL 125
L
Sbjct: 495 SL 496
Score = 46.6 bits (109), Expect = 1e-04
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Frame = -2
Query: 472 CLIYHMRHKDISPMLIRDFVT--KFTFVGVGIKRFMGALE-FYGLVDFNYVDVAKLAKAK 302
CLI+ + H D P + DF+ +FTFVGVGI + L +GL N VD+ LA
Sbjct: 83 CLIFQILHADYVPDSLFDFLADGRFTFVGVGIHDDVAKLRSHHGLEVENVVDLRYLAAQT 142
Query: 301 WPEKYDSLPELHCLAKD-LGI--KKSVDVKRPCLWKSDELTTTQIESACLDAFVSYK 140
+ L L ++ +G+ K V R W S LT Q+ AC DAF S++
Sbjct: 143 IGKPALRSAGLQGLVREVMGVWAPKPYHV-RVSAWDSWNLTPEQVMYACADAFASFE 198
>dbj|BAB91728.1| P0671D01.4 [Oryza sativa (japonica cultivar-group)]
gi|21952903|dbj|BAC06315.1| P0445H04.27 [Oryza sativa
(japonica cultivar-group)]
Length = 232
Score = 46.2 bits (108), Expect = 2e-04
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Frame = -2
Query: 472 CLIYHMRHKDISPMLIRDFVTKFT--FVGVGIKRFMGAL-EFYGLVDFNYVDVAKLAKAK 302
CLI+ + + D P +R F+ FVGVG+ + L + +GL N D+ LA +
Sbjct: 109 CLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADLRPLAAQR 168
Query: 301 WPEKYDSLPELHCLAK-----DLGIKKSVDVKRPCLWKSDELTTTQIESACLDAFVSYKL 137
S L + + DL + V + R W + L+ QI AC+DA+VS+++
Sbjct: 169 LGRPELSQAGLQAVVRAVMGADLVKPQRVTMSR---WDASCLSNEQIRYACIDAYVSFEV 225
Query: 136 GKELV 122
G+ L+
Sbjct: 226 GRRLL 230
>dbj|BAC16150.1| hypothetical protein~similar to Arabidopsis thaliana chromosome2,
At2g36110 [Oryza sativa (japonica cultivar-group)]
gi|24414042|dbj|BAC22291.1| hypothetical protein~similar
to Arabidopsis thaliana chromosome2, At2g36110 [Oryza
sativa (japonica cultivar-group)]
Length = 752
Score = 45.1 bits (105), Expect = 4e-04
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Frame = -2
Query: 472 CLIYHMRHKDISPMLIRDFVT--KFTFVGVGIKRFMGALEFYGLVDFNYVD------VAK 317
CL++H+ H D P +R F+ + TFVG G L Y D + VA
Sbjct: 97 CLVFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAY--YDLHVASARELRAVAA 154
Query: 316 LAKAKWPEKYDSLPELHCLAKDLGIKKSVDVKRPCLWKSDELTTTQIESACLDAFVSYKL 137
+ A D +AK + S W + L+ Q+E AC+DA+++++L
Sbjct: 155 MGNASMEAMADRFLGYPGIAKPTNVSMSA-------WHAPYLSIEQVEYACVDAYLAFRL 207
Query: 136 GKEL 125
L
Sbjct: 208 AVHL 211
Score = 37.0 bits (84), Expect = 0.11
Identities = 35/121 (28%), Positives = 59/121 (47%), Gaps = 8/121 (6%)
Frame = -2
Query: 472 CLIYHMRHKDISPMLIRDFVTK---FTFVGVGIKRFMGALE-FYGLVDFNYVDVAKLAKA 305
CL++ + + P +R F+ FVG GI+ L +GL +V + +A
Sbjct: 624 CLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAHHGL----HVACTRELRA 679
Query: 304 KWPEKYDSLPELHCLAKDL----GIKKSVDVKRPCLWKSDELTTTQIESACLDAFVSYKL 137
S+ + A++L GIKK V R W + +L+ Q++ AC+DAF+S++L
Sbjct: 680 VTGMGSSSMARM---AEELLGLAGIKKPAAVGRS-RWDAPKLSKKQVKYACVDAFLSHRL 735
Query: 136 G 134
G
Sbjct: 736 G 736
>emb|CAD39846.1| OSJNBb0072N21.12 [Oryza sativa (japonica cultivar-group)]
Length = 211
Score = 45.1 bits (105), Expect = 4e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = -2
Query: 472 CLIYHMRHKDISPMLIRDFVT--KFTFVGVGIKRFMGALEF-YGLVDFNYVDVAKLAKAK 302
CL++ + H D P + F+ +FTFVGVG++ L YGL VD+ LA
Sbjct: 83 CLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADT 142
Query: 301 WPEKYDSLPELHCLAKDLGIKKSVDVKRP-----CLWKSDELTTTQIESACLDAFVSYKL 137
L L +++ V + +P W L+ Q + AC DAF S ++
Sbjct: 143 LGRPDLRRAGLRALVREV---MGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREV 199
Query: 136 GKEL 125
G+ L
Sbjct: 200 GRRL 203
>dbj|BAB60933.1| P0682B08.3 [Oryza sativa (japonica cultivar-group)]
gi|15623802|dbj|BAB67862.1| P0487H02.22 [Oryza sativa
(japonica cultivar-group)]
Length = 201
Score = 38.9 bits (89), Expect = 0.028
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -2
Query: 208 WKSDELTTTQIESACLDAFVSYKLGKELV 122
W+ EL Q+E AC+DA+VSYKLG+ ++
Sbjct: 171 WEKRELDPAQVEYACIDAYVSYKLGERVL 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,096,569
Number of Sequences: 1393205
Number of extensions: 7732911
Number of successful extensions: 18416
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18402
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
