Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009534A_C01 KMC009534A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194614.1| xyloglucan endotransglycosylase, putative; prot... 114 3e-28
gb|AAM28287.1| xyloglucan endotransglycosylase [Ananas comosus] 110 5e-24
ref|NP_194312.1| xyloglucan endotransglycosylase XTR9; protein i... 106 4e-23
gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica] 108 5e-23
ref|NP_200561.1| xyloglucan endotransglycosylase, putative; prot... 107 1e-22
>ref|NP_194614.1| xyloglucan endotransglycosylase, putative; protein id: At4g28850.1
[Arabidopsis thaliana] gi|7447405|pir||T04514 xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) F16A16.40 -
Arabidopsis thaliana gi|4218113|emb|CAA22967.1|
xyloglucan endotransglycosylase-like protein
[Arabidopsis thaliana] gi|7269740|emb|CAB81473.1|
xyloglucan endotransglycosylase-like protein
[Arabidopsis thaliana]
Length = 292
Score = 114 bits (284), Expect(2) = 3e-28
Identities = 48/65 (73%), Positives = 57/65 (86%)
Frame = +1
Query: 349 LSSTGSQHDEIDFEFLGNTTGQPYIVNTNIYTRGKGSREQRFFLWFDPTADFHNYTIHWN 528
LSSTGS HDEIDFEFLGN TGQPY ++TN+Y +GKG+REQ+F WF+PT FHNYTIHWN
Sbjct: 92 LSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWN 151
Query: 529 PTEIV 543
P+E+V
Sbjct: 152 PSEVV 156
Score = 57.0 bits (136), Expect = 2e-07
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = +3
Query: 87 SGSAAQSKRSFLFGSTEMLIKLIPGNSAGTVTAFYVSS 200
+GSA +SK + LFGS EMLIKL+PGNSAGTV A+Y+SS
Sbjct: 57 AGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSS 94
Score = 33.5 bits (75), Expect(2) = 3e-28
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 644 WFVDSLPIRVFRNYE 688
WFVD PIRVFRNYE
Sbjct: 157 WFVDGTPIRVFRNYE 171
>gb|AAM28287.1| xyloglucan endotransglycosylase [Ananas comosus]
Length = 203
Score = 110 bits (275), Expect(2) = 5e-24
Identities = 47/65 (72%), Positives = 56/65 (85%)
Frame = +1
Query: 349 LSSTGSQHDEIDFEFLGNTTGQPYIVNTNIYTRGKGSREQRFFLWFDPTADFHNYTIHWN 528
LSS GS HDEIDFEFLGN +G PYI++TNIY++GKG+REQ+F+LWFDPT DFH Y+ WN
Sbjct: 14 LSSQGSMHDEIDFEFLGNLSGDPYILHTNIYSQGKGNREQQFYLWFDPTKDFHTYSALWN 73
Query: 529 PTEIV 543
PT IV
Sbjct: 74 PTHIV 78
Score = 32.3 bits (72), Expect = 6.3
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 153 IPGNSAGTVTAFYVSS 200
+PGNSAGTVT FY+SS
Sbjct: 1 VPGNSAGTVTTFYLSS 16
Score = 22.7 bits (47), Expect(2) = 5e-24
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 644 WFVDSLPIRVFRNYE 688
+FVD PIR F+N E
Sbjct: 79 FFVDGTPIREFKNNE 93
>ref|NP_194312.1| xyloglucan endotransglycosylase XTR9; protein id: At4g25820.1,
supported by cDNA: gi_20260567, supported by cDNA:
gi_4218962 [Arabidopsis thaliana] gi|7447404|pir||T04236
xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-)
F14M19.100 - Arabidopsis thaliana
gi|4218963|gb|AAD12249.1| xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|4539300|emb|CAB39603.1| putative xyloglucan endo-1,
4-beta-D-glucanase [Arabidopsis thaliana]
gi|7269433|emb|CAB79437.1| putative xyloglucan endo-1,
4-beta-D-glucanase [Arabidopsis thaliana]
gi|20260568|gb|AAM13182.1| putative xyloglucan endo-1,
4-beta-D-glucanase [Arabidopsis thaliana]
gi|28059332|gb|AAO30048.1| putative xyloglucan endo-1,
4-beta-D-glucanase [Arabidopsis thaliana]
Length = 287
Score = 106 bits (264), Expect(2) = 4e-23
Identities = 44/65 (67%), Positives = 52/65 (79%)
Frame = +1
Query: 349 LSSTGSQHDEIDFEFLGNTTGQPYIVNTNIYTRGKGSREQRFFLWFDPTADFHNYTIHWN 528
LSS G+ DEIDFEFLGN TG PY ++TN++T GKG RE +F LWFDPTADFH YT+HWN
Sbjct: 95 LSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWN 154
Query: 529 PTEIV 543
P I+
Sbjct: 155 PVNII 159
Score = 54.7 bits (130), Expect = 1e-06
Identities = 24/39 (61%), Positives = 32/39 (81%)
Frame = +3
Query: 84 ISGSAAQSKRSFLFGSTEMLIKLIPGNSAGTVTAFYVSS 200
+SGS QSK+ +LFG +M +KL+ GNSAGTVTA+Y+SS
Sbjct: 59 VSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSS 97
Score = 23.9 bits (50), Expect(2) = 4e-23
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 644 WFVDSLPIRVFRNYE 688
+ VD +PIRVF+N E
Sbjct: 160 FLVDGIPIRVFKNNE 174
>gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica]
Length = 282
Score = 108 bits (271), Expect = 5e-23
Identities = 46/65 (70%), Positives = 56/65 (85%)
Frame = +1
Query: 349 LSSTGSQHDEIDFEFLGNTTGQPYIVNTNIYTRGKGSREQRFFLWFDPTADFHNYTIHWN 528
LSS GS HDEIDFEFLGN +G PYI++TNI+T+GKG+REQ+F+LWFDPT DFH Y+I WN
Sbjct: 89 LSSLGSTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTKDFHTYSILWN 148
Query: 529 PTEIV 543
P I+
Sbjct: 149 PQTII 153
Score = 58.2 bits (139), Expect = 1e-07
Identities = 27/39 (69%), Positives = 32/39 (81%)
Frame = +3
Query: 87 SGSAAQSKRSFLFGSTEMLIKLIPGNSAGTVTAFYVSSL 203
SGS QSK +LFG +M IKL+PGNSAGTVTA+Y+SSL
Sbjct: 54 SGSGFQSKNQYLFGKIDMQIKLVPGNSAGTVTAYYLSSL 92
>ref|NP_200561.1| xyloglucan endotransglycosylase, putative; protein id: At5g57530.1,
supported by cDNA: gi_16323042 [Arabidopsis thaliana]
gi|9758314|dbj|BAB08788.1| xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|16323043|gb|AAL15256.1| AT5g57530/MUA2_10
[Arabidopsis thaliana] gi|21360435|gb|AAM47333.1|
AT5g57530/MUA2_10 [Arabidopsis thaliana]
Length = 285
Score = 107 bits (268), Expect = 1e-22
Identities = 44/65 (67%), Positives = 54/65 (82%)
Frame = +1
Query: 349 LSSTGSQHDEIDFEFLGNTTGQPYIVNTNIYTRGKGSREQRFFLWFDPTADFHNYTIHWN 528
LSS G DEIDFEFLGN TGQPY+++TN++T GKG+RE +F+LWFDPTADFH YT+ WN
Sbjct: 92 LSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWN 151
Query: 529 PTEIV 543
P I+
Sbjct: 152 PLNII 156
Score = 57.4 bits (137), Expect = 2e-07
Identities = 26/38 (68%), Positives = 32/38 (83%)
Frame = +3
Query: 87 SGSAAQSKRSFLFGSTEMLIKLIPGNSAGTVTAFYVSS 200
SGS QSK+ +LFG +M IKL+PGNSAGTVTA+Y+SS
Sbjct: 57 SGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSS 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,275,549
Number of Sequences: 1393205
Number of extensions: 12021594
Number of successful extensions: 28527
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 27540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28436
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
