Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009527A_C01 KMC009527A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704273.1| hypothetical protein [Plasmodium falciparum 3D7... 38 0.091
pir||G71605 hypothetical protein PFB0825c - malaria parasite (Pl... 35 0.59
ref|NP_473092.2| hypothetical protein [Plasmodium falciparum 3D7... 35 0.59
ref|NP_700715.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.77
ref|NP_704790.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.7
>ref|NP_704273.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499012|emb|CAD51092.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 552
Score = 37.7 bits (86), Expect = 0.091
Identities = 23/66 (34%), Positives = 38/66 (56%), Gaps = 3/66 (4%)
Frame = +3
Query: 207 NQFRHSQATPRIDFDFRINCKNTSKHANIIIQ*GRK---KKNPSSLSSKKKK*KQKTKIK 377
N+F++ A + +I+C+ TSK++N I + +K K + KKK+ K KTKIK
Sbjct: 311 NKFKNINAKTSLS---KISCRKTSKNSNDISKRKKKTITKTKKKTKKQKKKQKKTKTKIK 367
Query: 378 TKKRSN 395
K ++N
Sbjct: 368 NKNKTN 373
>pir||G71605 hypothetical protein PFB0825c - malaria parasite (Plasmodium
falciparum)
Length = 1193
Score = 35.0 bits (79), Expect = 0.59
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +2
Query: 272 HFQTCKHHHSVREKEKKSLFSIK*KKKVKTEDENKNKKKV*YKSSLSRTHKKLSYVQLFN 451
H Q + HH +EK+++ + IK + K+ +KNKK+ YK + +Y+ + N
Sbjct: 516 HKQKIEEHHGNKEKKERKI--IKKQNKI----ISKNKKE--YKKGKKKKKFGENYIPILN 567
Query: 452 LLLAAMSYIYLLH*NLFRKLL 514
L+ S+I +++ N+F+K+L
Sbjct: 568 TLI---SFIEVIYKNVFKKVL 585
>ref|NP_473092.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503426|gb|AAC71953.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1710
Score = 35.0 bits (79), Expect = 0.59
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +2
Query: 272 HFQTCKHHHSVREKEKKSLFSIK*KKKVKTEDENKNKKKV*YKSSLSRTHKKLSYVQLFN 451
H Q + HH +EK+++ + IK + K+ +KNKK+ YK + +Y+ + N
Sbjct: 751 HKQKIEEHHGNKEKKERKI--IKKQNKI----ISKNKKE--YKKGKKKKKFGENYIPILN 802
Query: 452 LLLAAMSYIYLLH*NLFRKLL 514
L+ S+I +++ N+F+K+L
Sbjct: 803 TLI---SFIEVIYKNVFKKVL 820
>ref|NP_700715.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495108|gb|AAN35439.1|AE014833_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1541
Score = 34.7 bits (78), Expect = 0.77
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -2
Query: 397 ILDLFFVFIFVFCFHFFFLLDREEGFFFFLPY*MMMFACLEVFLQLILKSKSIL 236
I FF FIF+F F FF FFFFL Y + F + +F ++ + +K ++
Sbjct: 39 IYSFFFFFIFIFIFISFFF------FFFFLLYATLFFLIIILFNKMQIPTKFLV 86
>ref|NP_704790.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505152|emb|CAD51933.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 413
Score = 33.5 bits (75), Expect = 1.7
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Frame = +3
Query: 27 KNWSLLGTMKEDSKSKLILVQSKDALKTDQ*PHAFLNFPHISSWNKSKVIVYVDQFLFPH 206
KN + K + K+ +LV D LK ++ N KVI H
Sbjct: 16 KNKNKKNNNKNNDKNNTLLVSPNDKLKKEKRKKKHKNL-------NQKVI---------H 59
Query: 207 NQFRHSQATPRIDFDFRINCKNTSKHANIIIQ*GRKKKNPSSLSSK--KKK*KQKTKIKT 380
N ++ I D IN + ++ H + + +KKKN + K KK K+KTK KT
Sbjct: 60 NNNNNNN----IHKDEHIN-EQSNNHIYVNNRTKKKKKNIELIKDKWINKKKKKKTKKKT 114
Query: 381 KKR----------SNINPPYLEHTKNFHMFSY 446
KK+ +NIN E K ++F Y
Sbjct: 115 KKKTNNTTIYDNDNNINVDEEEEKKKKNVFPY 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,627,311
Number of Sequences: 1393205
Number of extensions: 8672961
Number of successful extensions: 28576
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26115
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
