Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009522A_C01 KMC009522A_c01
(717 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196182.1| putative protein; protein id: At5g05630.1 [Arab... 196 3e-49
ref|NP_174466.1| amino acid permease, putative; protein id: At1g... 191 1e-47
ref|NP_174465.1| amino acid permease, putative; protein id: At1g... 178 6e-44
ref|NP_188589.1| amino acid permease, putative; protein id: At3g... 133 2e-30
ref|NP_566460.1| expressed protein; protein id: At3g13620.1, sup... 93 4e-18
>ref|NP_196182.1| putative protein; protein id: At5g05630.1 [Arabidopsis thaliana]
gi|9759088|dbj|BAB09657.1| contains similarity to
cationic amino acid transporter 1~gene_id:MJJ3.2
[Arabidopsis thaliana] gi|26453212|dbj|BAC43680.1|
unknown protein [Arabidopsis thaliana]
Length = 490
Score = 196 bits (498), Expect = 3e-49
Identities = 92/142 (64%), Positives = 115/142 (80%)
Frame = -1
Query: 717 ERGMXPEFFKISSRHGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAFI 538
ERGM PE F SR+ TP +GILFSASGV++LSWLSFQEIVAAEN LYC GM+LEF F+
Sbjct: 347 ERGMLPEVFAKRSRYRTPWVGILFSASGVIILSWLSFQEIVAAENLLYCFGMVLEFITFV 406
Query: 537 LLRIRYPNAPRPYKIPGGTVGAVLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQP 358
LR++YP A RP+KIP G +G+VLMCIPPT+LIGV++ F+ LKV ++SL A+ IGLV+QP
Sbjct: 407 RLRMKYPAASRPFKIPVGVLGSVLMCIPPTVLIGVIMAFTNLKVALVSLAAIVIGLVLQP 466
Query: 357 CLKYAEKKRWMKFSQNSELTDI 292
CLK EKK W+KFS +S L ++
Sbjct: 467 CLKQVEKKGWLKFSTSSHLPNL 488
>ref|NP_174466.1| amino acid permease, putative; protein id: At1g31830.1 [Arabidopsis
thaliana] gi|25403130|pir||D86442 probable amino acid
permease [imported] - Arabidopsis thaliana
gi|12321288|gb|AAG50709.1|AC079041_2 amino acid
permease, putative [Arabidopsis thaliana]
Length = 495
Score = 191 bits (484), Expect = 1e-47
Identities = 90/145 (62%), Positives = 117/145 (80%)
Frame = -1
Query: 717 ERGMXPEFFKISSRHGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAFI 538
ERGM PEFF SR+GTPL+GILFSASGV+LLSWLSFQEIVAAEN LYC+GMILEF AF+
Sbjct: 341 ERGMLPEFFAKRSRYGTPLLGILFSASGVVLLSWLSFQEIVAAENLLYCVGMILEFIAFV 400
Query: 537 LLRIRYPNAPRPYKIPGGTVGAVLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQP 358
+R+++P A RPYKIP GT G++LMCIPPTILI V+ S+LKV +S++ + IG ++ P
Sbjct: 401 RMRMKHPAASRPYKIPIGTTGSILMCIPPTILICAVVALSSLKVAAVSIVMMIIGFLIHP 460
Query: 357 CLKYAEKKRWMKFSQNSELTDINDE 283
L + ++KRW+KFS +S+L D+ +
Sbjct: 461 LLNHMDRKRWVKFSISSDLPDLQQQ 485
>ref|NP_174465.1| amino acid permease, putative; protein id: At1g31820.1 [Arabidopsis
thaliana] gi|25403128|pir||C86442 probable amino acid
permease [imported] - Arabidopsis thaliana
gi|12321291|gb|AAG50712.1|AC079041_5 amino acid
permease, putative [Arabidopsis thaliana]
Length = 482
Score = 178 bits (452), Expect = 6e-44
Identities = 86/145 (59%), Positives = 112/145 (76%)
Frame = -1
Query: 717 ERGMXPEFFKISSRHGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAFI 538
E G+ PE F SR+GTPL+GILFSASGVLLLS LSFQEI+AAEN LYC GMILEF AF+
Sbjct: 328 ELGILPEIFAQRSRYGTPLLGILFSASGVLLLSGLSFQEIIAAENLLYCGGMILEFIAFV 387
Query: 537 LLRIRYPNAPRPYKIPGGTVGAVLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQP 358
LR ++P A RPYKIP GTVG++L+C+PP +LI +V+ ST+KV ++S + V IG +M+P
Sbjct: 388 RLRKKHPAASRPYKIPVGTVGSILICVPPIVLICLVIVLSTIKVALVSFVMVVIGFLMKP 447
Query: 357 CLKYAEKKRWMKFSQNSELTDINDE 283
CL + + K+W+KFS S+L + E
Sbjct: 448 CLNHMDGKKWVKFSVCSDLAEFQKE 472
>ref|NP_188589.1| amino acid permease, putative; protein id: At3g19553.1 [Arabidopsis
thaliana] gi|9294126|dbj|BAB01977.1|
gene_id:T31J18.6~pir||F71651~similar to unknown protein
[Arabidopsis thaliana]
Length = 479
Score = 133 bits (335), Expect = 2e-30
Identities = 61/133 (45%), Positives = 91/133 (67%)
Frame = -1
Query: 717 ERGMXPEFFKISSRHGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAFI 538
E GM P FF S++GTP I IL SA+GV+ LSW+SFQEI+ NFLY LGM+LEF AF+
Sbjct: 316 EIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFV 375
Query: 537 LLRIRYPNAPRPYKIPGGTVGAVLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQP 358
LRI+ P+ RPY++P T G ++C+PP++L+ +V+ + K +IS + + +G + P
Sbjct: 376 KLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYP 435
Query: 357 CLKYAEKKRWMKF 319
L ++K+W +F
Sbjct: 436 FLTLVKEKQWARF 448
>ref|NP_566460.1| expressed protein; protein id: At3g13620.1, supported by cDNA:
gi_15810468 [Arabidopsis thaliana]
gi|11994564|dbj|BAB02604.1| contains similarity to amino
acid transporter~gene_id:K20M4.6 [Arabidopsis thaliana]
gi|15810469|gb|AAL07122.1| unknown protein [Arabidopsis
thaliana]
Length = 478
Score = 92.8 bits (229), Expect = 4e-18
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = -1
Query: 717 ERGMXPEFFKISSR-HGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAF 541
E G P+FF + S+ TP +GIL SA L LS+++F +I+++ NFLY LGM LEF +F
Sbjct: 322 ELGFLPKFFGVRSKWFNTPWVGILISALMSLGLSYMNFTDIISSANFLYTLGMFLEFASF 381
Query: 540 ILLRIRYPNAPRPYKIPGGTVGAVLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQ 361
I LR + P RPY++P G V+MC+ P+ + ++L F+T V +I + +
Sbjct: 382 IWLRRKLPQLKRPYRVPLKIPGLVVMCLIPSAFLVLILVFATKIVYLICGVMTIGAIGWY 441
Query: 360 PCLKYAEKKRWMKFSQNSELTDINDEG 280
+ Y K + +F++ + D N G
Sbjct: 442 FLINYFRKTKIFEFNEVIDDLDNNVNG 468
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,202,696
Number of Sequences: 1393205
Number of extensions: 12122034
Number of successful extensions: 34479
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 32938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34411
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
