Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009512A_C01 KMC009512A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194941.1| putative protein; protein id: At4g32140.1, supp... 199 4e-50
emb|CAB55421.1| zhb0013.1 [Oryza sativa (indica cultivar-group)] 152 6e-36
ref|NP_596306.1| hypothetical protein similar to yeast YML018C [... 75 9e-13
gb|EAA04392.1| agCP3264 [Anopheles gambiae str. PEST] 69 7e-11
ref|NP_013694.1| Hypothetical ORF; Yml018cp [Saccharomyces cerev... 69 7e-11
>ref|NP_194941.1| putative protein; protein id: At4g32140.1, supported by cDNA:
gi_15982861 [Arabidopsis thaliana]
gi|7446853|pir||T04631 hypothetical protein F10N7.50 -
Arabidopsis thaliana gi|2827623|emb|CAA16575.1| putative
protein [Arabidopsis thaliana]
gi|7270118|emb|CAB79932.1| putative protein [Arabidopsis
thaliana] gi|15982862|gb|AAL09778.1| AT4g32140/F10N7_50
[Arabidopsis thaliana] gi|21360499|gb|AAM47365.1|
AT4g32140/F10N7_50 [Arabidopsis thaliana]
Length = 394
Score = 199 bits (505), Expect = 4e-50
Identities = 95/107 (88%), Positives = 102/107 (94%)
Frame = -1
Query: 722 WLIWPLSALGIEPKFTIPHSARVDEVVLANGFIGSVLSDYFWALCVVWTTPLVATLGMSL 543
WL+WPL+ALGIEPKFTIPHS +VDEVVLANGFIGSVLSDYFWAL VVWTTPLVATLGMSL
Sbjct: 288 WLVWPLTALGIEPKFTIPHSVKVDEVVLANGFIGSVLSDYFWALSVVWTTPLVATLGMSL 347
Query: 542 TIPLAMLADMVIHGRHYSALYILGSVQVFAGFVIANISDWMTKKLGL 402
TIPLAM+ADM+IHGRHYSA+YILGS QVFAGFVIANISD +KKLGL
Sbjct: 348 TIPLAMVADMMIHGRHYSAIYILGSTQVFAGFVIANISDLFSKKLGL 394
>emb|CAB55421.1| zhb0013.1 [Oryza sativa (indica cultivar-group)]
Length = 294
Score = 152 bits (383), Expect = 6e-36
Identities = 76/99 (76%), Positives = 83/99 (83%), Gaps = 11/99 (11%)
Frame = -1
Query: 722 WLIWPLSALGIEPKFTIPHSARVDEVVLANGFIGSVLSDYFW-----------ALCVVWT 576
WL+WPL+ALGIEPKFTIPHSA+VDEVVLANG IGSVLSDYF AL VVWT
Sbjct: 193 WLVWPLTALGIEPKFTIPHSAKVDEVVLANGLIGSVLSDYFCCAIFDMELLVRALSVVWT 252
Query: 575 TPLVATLGMSLTIPLAMLADMVIHGRHYSALYILGSVQV 459
TPLVATLGMSLTIPLAM+ADM+IHGR YSA+YI GSVQ+
Sbjct: 253 TPLVATLGMSLTIPLAMVADMIIHGRRYSAVYIFGSVQI 291
>ref|NP_596306.1| hypothetical protein similar to yeast YML018C [Schizosaccharomyces
pombe] gi|7491668|pir||T40424 hypothetical protein
SPBC405.03c - fission yeast (Schizosaccharomyces pombe)
gi|4490675|emb|CAB38602.1| hypothetical protein similar
to yeast YML018C [Schizosaccharomyces pombe]
Length = 341
Score = 75.1 bits (183), Expect = 9e-13
Identities = 39/99 (39%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Frame = -1
Query: 719 LIWP----LSALGIEPKFTIPHSARVDEVVLANGFIGSVLSDYFWALCVVWTTPLVATLG 552
L+WP L G+E +F++P + V++ N I + +SDY W + ++ T+PL+ T+G
Sbjct: 238 LLWPFLIILHLYGVE-RFSLPSTTAGLIVLIINASI-TFVSDYLWVIAMLMTSPLLVTVG 295
Query: 551 MSLTIPLAMLADMVIHGRHYSALYILGSVQVFAGFVIAN 435
MSL+IPLA+ D+++ G + + ILGS+ VFAGF++ N
Sbjct: 296 MSLSIPLALFFDILLKGHYLNFSLILGSLLVFAGFIVVN 334
>gb|EAA04392.1| agCP3264 [Anopheles gambiae str. PEST]
Length = 413
Score = 68.9 bits (167), Expect = 7e-11
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Frame = -1
Query: 719 LIWPL------SALGIEPKFTIPHSARVDEVVLANGFIGSVLSDYFWALCVVWTTPLVAT 558
L+WPL S L + F +P S R V+ NG IG+VLS+ W T+ L+ T
Sbjct: 267 LLWPLLFVLNFSQLEV---FELP-SRRQFIVLFLNGLIGTVLSEALWLWGCFLTSSLIGT 322
Query: 557 LGMSLTIPLAMLADMVIHGRHYSALYILGSVQVFAGFVI 441
+ +SL IPLAML DMV+HG+ Y L+ LGS+ +F V+
Sbjct: 323 VAISLQIPLAMLFDMVLHGKTYPLLFYLGSLPMFLSLVL 361
>ref|NP_013694.1| Hypothetical ORF; Yml018cp [Saccharomyces cerevisiae]
gi|2497105|sp|Q03730|YMB8_YEAST HYPOTHETICAL 43.7 KD
PROTEIN IN OST6-PSP2 INTERGENIC REGION
gi|1077231|pir||S49759 probable membrane protein YML018c
- yeast (Saccharomyces cerevisiae)
gi|575701|emb|CAA86637.1| unknown orf, len: 393, CAI:
0.13 [Saccharomyces cerevisiae]
Length = 393
Score = 68.9 bits (167), Expect = 7e-11
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Frame = -1
Query: 716 IWP----LSALGIEPKFTIPHSARVDEVVLANGFIGSVLSDYFWALCVVWTTPLVATLGM 549
+WP L G EP F++P +V ++ N I + +SD+ WA ++ T+PL T+G+
Sbjct: 271 LWPSLIVLDFFGWEP-FSLPKDPKVVVIIFVNCLI-TFVSDFCWAKAMLLTSPLTVTVGL 328
Query: 548 SLTIPLAMLADMVIHGRHYSALYILGSVQVFAGFVIANIS 429
S+TIPLAM D++ + SALY+ G+ + F I N S
Sbjct: 329 SITIPLAMFGDVIFKHKTMSALYLFGATLILGSFFIINKS 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 666,858,825
Number of Sequences: 1393205
Number of extensions: 15166981
Number of successful extensions: 32530
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32526
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
