Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009510A_C01 KMC009510A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD10441.1| NADH dehydrogenase subunit 6 [Necator americanus] 37 0.12
ref|NP_579956.2| NADH dehydrogenase subunit 6 [Necator americanus] 37 0.12
ref|NP_350020.1| Membrane associated, signal transduction histid... 36 0.34
ref|NP_700552.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.57
gb|AAA66041.1| unknown protein 34 0.98
>emb|CAD10441.1| NADH dehydrogenase subunit 6 [Necator americanus]
Length = 144
Score = 37.4 bits (85), Expect = 0.12
Identities = 30/95 (31%), Positives = 45/95 (46%), Gaps = 2/95 (2%)
Frame = +1
Query: 76 MN**PYFSSVFRVISL--CVLSLFVESHVVFHAFSCIFIFSLVFILLW*FSSFIGSFLAF 249
MN P SS F ++S+ C+ L +V F F C+ S +F++L FSS ++
Sbjct: 18 MNMDPMKSSFFLILSMMMCMPMLSFSGYVWFSYFICLLFLSGIFVILVYFSSLSKISIS- 76
Query: 250 *VKFRGLV*FLVHFILLCNLTFEFLAFVPSLSMQV 354
+G V LV F+ L F V S+S+ V
Sbjct: 77 ----KGYVVLLVFFLTLLVFGMNFGVVVASVSLNV 107
>ref|NP_579956.2| NADH dehydrogenase subunit 6 [Necator americanus]
Length = 144
Score = 37.4 bits (85), Expect = 0.12
Identities = 30/95 (31%), Positives = 45/95 (46%), Gaps = 2/95 (2%)
Frame = +1
Query: 76 MN**PYFSSVFRVISL--CVLSLFVESHVVFHAFSCIFIFSLVFILLW*FSSFIGSFLAF 249
MN P SS F ++S+ C+ L +V F F C+ S +F++L FSS ++
Sbjct: 18 MNMDPMKSSFFLILSMMMCMPMLSFSGYVWFSYFICLLFLSGIFVILVYFSSLSKISIS- 76
Query: 250 *VKFRGLV*FLVHFILLCNLTFEFLAFVPSLSMQV 354
+G V LV F+ L F V S+S+ V
Sbjct: 77 ----KGYVVLLVFFLTLLVFGMNFGVVVASVSLNV 107
>ref|NP_350020.1| Membrane associated, signal transduction histidine kinase-like
ATPase [Clostridium acetobutylicum]
gi|25499228|pir||E97321 membrane associated, signal
transduction histidine kinase-like ATPase [imported] -
Clostridium acetobutylicum
gi|15026519|gb|AAK81360.1|AE007840_4 Membrane
associated, signal transduction histidine kinase-like
ATPase [Clostridium acetobutylicum]
Length = 397
Score = 35.8 bits (81), Expect = 0.34
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = +1
Query: 100 SVFRVISLCVLSLFVESHVVFHAFSCIFIFSLVFILLW*FSSFIGSFLAF*VKFRGLV*F 279
S+ +I +CV SLF+++ + F I IF+L+ IL FI + ++ K R + F
Sbjct: 17 SIICIILVCVFSLFLQNIKEIYLFQSI-IFTLIMILF-----FIMYWFSYIFKNRYWIYF 70
Query: 280 LVHFILLCNLTF--------EFLAFVPSLSMQVTRL 363
L+ I++C F F+ +P L Q L
Sbjct: 71 LIQGIIICACAFLIQKGYHALFIGIIPILMSQSVEL 106
>ref|NP_700552.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23494942|gb|AAN35276.1|AE014830_20 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2379
Score = 35.0 bits (79), Expect = 0.57
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Frame = -1
Query: 447 KNLKSSTLTHFNASIKPLNSLAFF-----L*LLQPGYLHRKTRNKSKKLKG*IAQKYKMN 283
K K +L FN+ + P ++ + + + ++ +K + K++K G + +KY
Sbjct: 163 KGKKKISLDSFNSELSPQSNTSPIYIKKKINEINYHFIQKKKKKKNQK-NGELNKKYSKK 221
Query: 282 *ELNKTPKLYSKCKK----TPYKTTKLPKQNKD*RKDKNA*ECMKHYMRLNKKTQNTQRN 115
+NK K Y K KK Y+ K ++NK K+K E K Y + NKK + ++N
Sbjct: 222 LSINKKNKKYEKHKKYEKHKKYEKHKKYEKNKKYEKNKKY-EKNKKYEK-NKKNEKNKKN 279
Query: 114 D 112
+
Sbjct: 280 E 280
>gb|AAA66041.1| unknown protein
Length = 268
Score = 34.3 bits (77), Expect = 0.98
Identities = 30/94 (31%), Positives = 49/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 91 YFSSVFRVISLCVLSLFVESHVVFHAFSCIFIFS------LVFILLW*FSSFIGSFLAF* 252
++ S+ RV+S+C S + S +F++F+C+ +FS + +L F FI FL F
Sbjct: 99 FWFSISRVVSMC--SFLIASISIFNSFNCLIVFSWNSFQGFLCLLSMGFYLFIYVFLEF- 155
Query: 253 VKFRGLV*FL-VHFILLCNLTFEFL-AFVPSLSM 348
F+G + L + F L + EF F+ LSM
Sbjct: 156 --FQGFLCLLSMGFYLFIYVFLEFFQGFLCLLSM 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,567,000
Number of Sequences: 1393205
Number of extensions: 7594132
Number of successful extensions: 15804
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15782
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
