Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009494A_C01 KMC009494A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_579772.1| hypothetical protein [Pyrococcus furiosus DSM 3... 33 0.60
dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis] 32 1.8
dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis] 32 1.8
ref|NP_614762.1| Uncharacterized protein specific for M.kandleri... 32 1.8
gb|EAA20514.1| hypothetical protein [Plasmodium yoelii yoelii] 31 3.0
>ref|NP_579772.1| hypothetical protein [Pyrococcus furiosus DSM 3638]
gi|18894257|gb|AAL82167.1| hypothetical protein
[Pyrococcus furiosus DSM 3638]
Length = 291
Score = 33.5 bits (75), Expect = 0.60
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -3
Query: 117 IKILLMCNKLPYATSFSFFCIGLKYPLYFYSME 19
+ +L+ ++LP+ FSFF I L Y LYFY+++
Sbjct: 71 LPLLMSKDRLPFYLGFSFFSIFLFYSLYFYTVK 103
>dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
Length = 782
Score = 32.0 bits (71), Expect = 1.8
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -1
Query: 209 FLYHSNPLLIHSRRFILKHI---IKLTVTTRSYGSRSFSCVINFPTLPHFPSFVLG*STP 39
FL S P L+ F+L+ I +K+T+ TR G+ VI F T+P F ++ G +
Sbjct: 503 FLETSFPGLLEIPGFLLEFITPIVKVTIKTRGSGNNR---VIPFYTMPEFEAWRDGEGSQ 559
Query: 38 CTSIQWKQKY 9
C +W KY
Sbjct: 560 C---RWTHKY 566
>dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
Length = 782
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/70 (35%), Positives = 35/70 (49%), Gaps = 3/70 (4%)
Frame = -1
Query: 209 FLYHSNPLLIHSRRFILKHI---IKLTVTTRSYGSRSFSCVINFPTLPHFPSFVLG*STP 39
FL S P L+ F+L+ I +K+TV TR G+ VI F T+P F ++ G
Sbjct: 503 FLETSFPGLLEIPGFLLEFITPIVKVTVKTRGSGNNR---VIPFYTMPEFEAWRDGEGAE 559
Query: 38 CTSIQWKQKY 9
C +W KY
Sbjct: 560 C---RWTHKY 566
>ref|NP_614762.1| Uncharacterized protein specific for M.kandleri, MK-39 family
[Methanopyrus kandleri AV19] gi|19888154|gb|AAM02692.1|
Uncharacterized protein specific for M.kandleri, MK-39
family [Methanopyrus kandleri AV19]
Length = 453
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -3
Query: 204 VSFKPTLDSL*KVYIETYNKTYCNNQILRIKILLMCNKLPYATSFSFFCIGL---KYP 40
V P L+ L + ++ T+ KT QILR+K ++ +P+ F +GL +YP
Sbjct: 286 VQGNPALEILTERFLPTFLKTLAGKQILRVKETIVSALMPHTQYVRTFLVGLYMSQYP 343
>gb|EAA20514.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 428
Score = 31.2 bits (69), Expect = 3.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = -3
Query: 219 LLMFPVSFKPTLDSL*KVY------IETYNKTYCNNQILRIKILL--MCNKLPYATSFSF 64
+ ++P KPTLD L + ++ Y N+ LR + +L M NK P + +
Sbjct: 269 MALYPYDRKPTLDELIPIMDPMQLLVDELTYRYTQNKDLRAQAILKVMINKYPLLNFYKY 328
Query: 63 FC 58
FC
Sbjct: 329 FC 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,857,622
Number of Sequences: 1393205
Number of extensions: 8443265
Number of successful extensions: 23578
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23574
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
