Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009488A_C01 KMC009488A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P28641|DHN3_PEA DEHYDRIN DHN3 gi|100035|pir||S18139 dehydrin ... 97 3e-19
pir||T06813 dehydrin 3 - garden pea gi|1928882|gb|AAB51381.1| de... 89 6e-17
gb|AAL15651.1|AF411554_1 dehydrin-like protein [Medicago sativa] 88 1e-16
sp|P28639|DHN1_PEA DEHYDRIN DHN1 gi|280395|pir||S25088 dehydrin ... 85 8e-16
emb|CAC80719.1| putative dehydrin [Helianthus annuus] 82 7e-15
>sp|P28641|DHN3_PEA DEHYDRIN DHN3 gi|100035|pir||S18139 dehydrin DHN3 - garden pea
gi|20709|emb|CAA44789.1| pea dehydrin DHN3 [Pisum
sativum]
Length = 232
Score = 96.7 bits (239), Expect = 3e-19
Identities = 68/142 (47%), Positives = 82/142 (56%), Gaps = 34/142 (23%)
Frame = -2
Query: 696 TGTGTGYGTGGHGTDYGTTGTH-GHGTTGTGTGYGTGGHGTEYGTTGTGG---------- 550
T TG+GYGTG T YG +GT+ +G+T TG+GYGTG T YG +GT
Sbjct: 92 TNTGSGYGTG---TGYGGSGTNPDYGSTNTGSGYGTG---TGYGGSGTTEYVREEHHGDK 145
Query: 549 -GVMDKIKEKLPCAGSTATHEYGSG-GTTG----------TTTTTTG----------HHG 436
GVMDKIKEK+P + T+ G+G G+TG T +TG HHG
Sbjct: 146 KGVMDKIKEKIPGTEQSRTNTDGTGYGSTGQGYVREQQHGTGYGSTGQGYVREQQDVHHG 205
Query: 435 -EQHHEKKGIMDKIKEKLPGTG 373
EQH EKKGIM+KIKEKLPGTG
Sbjct: 206 DEQHGEKKGIMEKIKEKLPGTG 227
Score = 52.0 bits (123), Expect = 8e-06
Identities = 42/134 (31%), Positives = 50/134 (36%), Gaps = 67/134 (50%)
Frame = -2
Query: 693 GTGTGYGTGGHGTDYGTTGTH-------GHGTTGT------------------------- 610
GTGTGYG G DYG+T T G+G +GT
Sbjct: 99 GTGTGYGGSGTNPDYGSTNTGSGYGTGTGYGGSGTTEYVREEHHGDKKGVMDKIKEKIPG 158
Query: 609 ---------GTGYGTGG--------HGTEYGTTGTG------------------GGVMDK 535
GTGYG+ G HGT YG+TG G G+M+K
Sbjct: 159 TEQSRTNTDGTGYGSTGQGYVREQQHGTGYGSTGQGYVREQQDVHHGDEQHGEKKGIMEK 218
Query: 534 IKEKLPCAGSTATH 493
IKEKLP G+ H
Sbjct: 219 IKEKLPGTGACTGH 232
>pir||T06813 dehydrin 3 - garden pea gi|1928882|gb|AAB51381.1| dehydrin 3 [Pisum
sativum]
Length = 198
Score = 89.0 bits (219), Expect = 6e-17
Identities = 62/144 (43%), Positives = 75/144 (52%), Gaps = 36/144 (25%)
Frame = -2
Query: 696 TGTGTGYG--------TGGHGTDYGTTGTHG----HGTTGTGTGYGTGGHGTEYGTTGTG 553
TG G G+G T G+GT G G +G +G+T TG+GYGTG T YG +G+
Sbjct: 53 TGQGHGHGQQHRGVDQTTGYGTHTGGVGGYGTKPEYGSTNTGSGYGTG---TGYGGSGSN 109
Query: 552 G-----------GVMDKIKEKLPCAGSTATHEYGSG-GTTGT------------TTTTTG 445
GVMDKIKEK+P + T+ G+G G+TG
Sbjct: 110 EYVREEHHGDKKGVMDKIKEKIPGTEQSRTNTDGTGYGSTGQGYVREQQRVDHGDEQRVD 169
Query: 444 HHGEQHHEKKGIMDKIKEKLPGTG 373
H EQH EKKGIMDKIKEKLPGTG
Sbjct: 170 HGDEQHGEKKGIMDKIKEKLPGTG 193
Score = 44.7 bits (104), Expect = 0.001
Identities = 35/101 (34%), Positives = 40/101 (38%), Gaps = 34/101 (33%)
Frame = -2
Query: 693 GTGTGYGTGG---------HGTDYGTT--------GTHGHGTTGTGTGYGTGGHG----- 580
GTGTGYG G HG G GT T GTGYG+ G G
Sbjct: 98 GTGTGYGGSGSNEYVREEHHGDKKGVMDKIKEKIPGTEQSRTNTDGTGYGSTGQGYVREQ 157
Query: 579 ----------TEYGTT--GTGGGVMDKIKEKLPCAGSTATH 493
++G G G+MDKIKEKLP G+ H
Sbjct: 158 QRVDHGDEQRVDHGDEQHGEKKGIMDKIKEKLPGTGACTGH 198
>gb|AAL15651.1|AF411554_1 dehydrin-like protein [Medicago sativa]
Length = 330
Score = 88.2 bits (217), Expect = 1e-16
Identities = 62/135 (45%), Positives = 70/135 (50%), Gaps = 29/135 (21%)
Frame = -2
Query: 693 GTGTGYGTGG-----HGTDYGTTGTHGHGTTGTG-----TGYGTG---------GHGTE- 574
GTGTG+GT G HG YGT G+GTTG G YGTG GHGT
Sbjct: 119 GTGTGHGTTGVGHQQHGDTYGTGTGTGYGTTGVGHQQHGDTYGTGTGNWNWNEVGHGTTG 178
Query: 573 YGTTGTGGG---------VMDKIKEKLPCAGSTATHEYGSGGTTGTTTTTTGHHGEQHHE 421
YG T G G V+DKIKEK+ G T T GTTG GH G Q H
Sbjct: 179 YGATDVGHGHQQHGENRGVVDKIKEKISGTG-TGTGTGTGHGTTGYGAGGVGH-GHQQHG 236
Query: 420 KKGIMDKIKEKLPGT 376
+KG++DKIKEK+PGT
Sbjct: 237 EKGVVDKIKEKIPGT 251
Score = 82.4 bits (202), Expect = 5e-15
Identities = 53/125 (42%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Frame = -2
Query: 693 GTGTGYGTGGHGTDYGTTGTHGHGTT--------GTGTGYGTGG-----HGTEYGT-TGT 556
GTGTG GT G+G G TG G GTGTG+GT G HG YGT TGT
Sbjct: 85 GTGTGTGTTGYGATGGGTGHDNRGVVDKIKEKIPGTGTGHGTTGVGHQQHGDTYGTGTGT 144
Query: 555 GGGVMDKIKEKLPCAGSTATHEYG----SGGTTGTTTTTTGHHGEQHHEKKGIMDKIKEK 388
G G ++ T T + GTTG T GH +QH E +G++DKIKEK
Sbjct: 145 GYGTTGVGHQQHGDTYGTGTGNWNWNEVGHGTTGYGATDVGHGHQQHGENRGVVDKIKEK 204
Query: 387 LPGTG 373
+ GTG
Sbjct: 205 ISGTG 209
Score = 82.0 bits (201), Expect = 7e-15
Identities = 72/167 (43%), Positives = 77/167 (45%), Gaps = 66/167 (39%)
Frame = -2
Query: 696 TGTGTGYGTGG-----HGTDYGT-TGTH-----GHGTTG--------------------- 613
TGTGTGYGT G HG YGT TG GHGTTG
Sbjct: 140 TGTGTGYGTTGVGHQQHGDTYGTGTGNWNWNEVGHGTTGYGATDVGHGHQQHGENRGVVD 199
Query: 612 --------TGTGYGTG-GHGTE-YGTTGTGGG--------VMDKIKEKLPCAGSTATHEY 487
TGTG GTG GHGT YG G G G V+DKIKEK+P T + Y
Sbjct: 200 KIKEKISGTGTGTGTGTGHGTTGYGAGGVGHGHQQHGEKGVVDKIKEKIP---GTEQNTY 256
Query: 486 GSGGTTGTTTTTT-------------GHHG--EQH-HEKKGIMDKIK 394
G+G TGT TT GHHG EQH EKKGIM+KIK
Sbjct: 257 GTGTGTGTGHGTTTGYGSTGQEYGREGHHGHDEQHLGEKKGIMEKIK 303
Score = 58.2 bits (139), Expect = 1e-07
Identities = 45/117 (38%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Frame = -2
Query: 696 TGTGTGYG---TGGHGTDYGTTGTHGHGTTGTGTGYGTGGHG--TEYGT-TGTGGGVMDK 535
TG YG + G YG + G T TG G+ HG T YG TG+GG
Sbjct: 11 TGRVDEYGNPLSQGQVDQYGNPISGGGMTGATGHGHHQQHHGVDTGYGAHTGSGGAHTGG 70
Query: 534 IKEKLPCAGSTATHEYGSGGTTGTTTTTTGH---HGEQHHEKKGIMDKIKEKLPGTG 373
+ G T G+G TGT T TTG+ G H+ +G++DKIKEK+PGTG
Sbjct: 71 V------GGYGGTDIDGTGYGTGTGTGTTGYGATGGGTGHDNRGVVDKIKEKIPGTG 121
>sp|P28639|DHN1_PEA DEHYDRIN DHN1 gi|280395|pir||S25088 dehydrin DHN1 - garden pea
gi|20705|emb|CAA44787.1| pea dehydrin DHN1 [Pisum
sativum]
Length = 197
Score = 85.1 bits (209), Expect = 8e-16
Identities = 61/129 (47%), Positives = 70/129 (53%), Gaps = 25/129 (19%)
Frame = -2
Query: 684 TGYGT--GGHGTDYGTTGTHGHGTTGTGTGYGTGGHGTEYGTTGTGG-----------GV 544
TGYGT GG G YGT +G+ T TG+GYGTG T YG +GT GV
Sbjct: 70 TGYGTHTGGVG-GYGTNPEYGN--TNTGSGYGTG---TGYGGSGTNEYVREDHHGDKKGV 123
Query: 543 MDKIKEKLPCAGSTATHEYGSG------GTTGTTTTTTGH------HGEQHHEKKGIMDK 400
MDKIKEK+P + T+ G+G G +G TG H H EKKGIMDK
Sbjct: 124 MDKIKEKIPGTEQSRTNTDGAGYGSTGYGASGGGIGNTGQEYVREEHRVDHGEKKGIMDK 183
Query: 399 IKEKLPGTG 373
IKEKLPGTG
Sbjct: 184 IKEKLPGTG 192
Score = 48.1 bits (113), Expect = 1e-04
Identities = 35/100 (35%), Positives = 38/100 (38%), Gaps = 33/100 (33%)
Frame = -2
Query: 693 GTGTGYGTGG---------HGTDYGTT--------GTHGHGTTGTGTGYGTGGHGTEYGT 565
GTGTGYG G HG G GT T G GYG+ G+G G
Sbjct: 98 GTGTGYGGSGTNEYVREDHHGDKKGVMDKIKEKIPGTEQSRTNTDGAGYGSTGYGASGGG 157
Query: 564 TGTGG----------------GVMDKIKEKLPCAGSTATH 493
G G G+MDKIKEKLP G H
Sbjct: 158 IGNTGQEYVREEHRVDHGEKKGIMDKIKEKLPGTGGCTGH 197
>emb|CAC80719.1| putative dehydrin [Helianthus annuus]
Length = 236
Score = 82.0 bits (201), Expect = 7e-15
Identities = 68/160 (42%), Positives = 73/160 (45%), Gaps = 56/160 (35%)
Frame = -2
Query: 690 TGTGYGTGGHGTD-YGTTGTHG------HGTTGTGTGYGTGGH----------------- 583
TG G GTGG GT YGTTG HG H T GTGT Y +GG
Sbjct: 81 TGLGQGTGGIGTGGYGTTGHHGLGTGIGHTTGGTGTDYTSGGRSTGQTGYQGLGTESEFR 140
Query: 582 ---GTEYGTTGTGGG--------------------------VMDKIKEKLPCAGSTATHE 490
GT G TGTG G VM KIKEKLP G +
Sbjct: 141 GKTGTGVGGTGTGTGILHRSGSSGSSSSEDDGQGGRRKKKGVMQKIKEKLP-GGHRQEEQ 199
Query: 489 YGSGGTTGTTTTTTGH---HGEQHHEKKGIMDKIKEKLPG 379
Y S TTTTTTG +GE H EKKG+M+KIKEKLPG
Sbjct: 200 YQSQ----TTTTTTGGGAGYGETH-EKKGMMEKIKEKLPG 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 689,829,836
Number of Sequences: 1393205
Number of extensions: 18722779
Number of successful extensions: 166774
Number of sequences better than 10.0: 2765
Number of HSP's better than 10.0 without gapping: 70916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120138
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
