Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009442A_C01 KMC009442A_c01
(411 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702576.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.17
ref|NP_741808.1| Beta Carbonic Anhydrase BCA-1 (bca-1) [Caenorha... 33 1.1
gb|AAM76341.1| putative transposase [Daphnia pulicaria] 32 2.4
gb|EAA19954.1| neural polypyrimidine tract binding protein [Plas... 31 3.2
ref|NP_003164.1| suppressor of variegation 3-9 homolog 1 (Drosop... 30 5.4
>ref|NP_702576.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497762|gb|AAN37300.1|AE014827_43 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 720
Score = 35.4 bits (80), Expect = 0.17
Identities = 20/87 (22%), Positives = 43/87 (48%), Gaps = 5/87 (5%)
Frame = +1
Query: 43 KSPINLN-----YVNMTLACAINMLYNIISHSSDPLVSFNNHFLQNLDEELP*NQHLQFC 207
KSP N+N Y N + C I + I +++ + +N ++N + ++ +H +C
Sbjct: 356 KSPFNINKIINNYQNNYIQCIILNQHQKIESTNNTNMENDNKNVRNFNRDITSMKHNTYC 415
Query: 208 HS*FPNTKPRITEKMEKENDRKSRVND 288
H+ + K + + K +D K++ +D
Sbjct: 416 HNENDDNKNKNDDNKNKNDDNKNKNDD 442
>ref|NP_741808.1| Beta Carbonic Anhydrase BCA-1 (bca-1) [Caenorhabditis elegans]
gi|20198884|gb|AAM15604.1|U39648_7 Beta carbonic
anhydrase protein 1, isoform b [Caenorhabditis elegans]
Length = 429
Score = 32.7 bits (73), Expect = 1.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 137 SLSITTSFRTWMRSCLRINTYSFVIHNFQTLNQELQRKWKKKMTEKVGSMM 289
S + T+ R W +CL + T F++H + +E K +K+ K+ ++
Sbjct: 114 STKLPTNMRKWTVTCLGLATIPFIVHPIDSFVEEAMDKTARKIYNKMNKIL 164
>gb|AAM76341.1| putative transposase [Daphnia pulicaria]
Length = 487
Score = 31.6 bits (70), Expect = 2.4
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = +2
Query: 125 QIL*SLSITTSFRTWMRSCLRINTYSFVIHNFQTLNQELQRKWKKKMTEKV 277
Q + + I + F+ W R CLR TY F I+ ++ +R + E+V
Sbjct: 252 QTMKNTPIKSGFKIWSRCCLRGYTYKFEIYQGARFGEKQKRSRNNEAVERV 302
>gb|EAA19954.1| neural polypyrimidine tract binding protein [Plasmodium yoelii
yoelii]
Length = 387
Score = 31.2 bits (69), Expect = 3.2
Identities = 26/134 (19%), Positives = 62/134 (45%), Gaps = 1/134 (0%)
Frame = +1
Query: 7 IILCYNLKLSKEKSPINLNYVNMTLACAINMLYNIISHSSDPLVSFNNHFLQNLDEELP* 186
+++CYN+ KE S +N + ++ ++ + + L+ ++N+ ++ +E
Sbjct: 142 VLICYNIP--KEYSDVNKLFNLFSIYGYVSRIKILREKPDSALIQYSNYLFSSMAQECL- 198
Query: 187 NQHLQFCHS*FPNTKPRITE-KMEKENDRKSRVNDEFAAIHIVPDVIQVWTCIINVHNIH 363
QH + C + +I + K+ ++ + +F + H Q + I VH IH
Sbjct: 199 -QHAKICQNILELHFSKIYDIKISYQDKSRDSYKAKFFSNHD-----QRYGVINFVHFIH 252
Query: 364 YYAVISFLFHSNFM 405
+ ++F+ +NF+
Sbjct: 253 FVNFVNFVNFANFV 266
>ref|NP_003164.1| suppressor of variegation 3-9 homolog 1 (Drosophila); suppressor of
variegation 3-9 (Drosophila) homolog; suppressor of
variegation 3-9 (Drosophila) homolog 1 [Homo sapiens]
gi|25091290|sp|O43463|SU91_HUMAN Histone-lysine
N-methyltransferase, H3 lysine-9 specific 1 (Histone
H3-K9 methyltransferase 1) (H3-K9-HMTase 1) (Suppressor
of variegation 3-9 homolog 1) (Su(var)3-9 homolog 1)
gi|2707215|gb|AAB92224.1| Su(var)3-9 homolog [Homo
sapiens] gi|6289079|gb|AAF06805.1|AF196970_2 SUV39H
[Homo sapiens] gi|13623277|gb|AAH06238.1|AAH06238
suppressor of variegation 3-9 (Drosophila) homolog 1
[Homo sapiens]
Length = 412
Score = 30.4 bits (67), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 106 NIISHSSDPLVSFNNHFLQNLDEELP 183
+ ++HS DP + N F+ NLDE LP
Sbjct: 320 HFVNHSCDPNLQVYNVFIDNLDERLP 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,664,491
Number of Sequences: 1393205
Number of extensions: 6572227
Number of successful extensions: 17438
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17437
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
