Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009411A_C01 KMC009411A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564557.1| expressed protein; protein id: At1g49880.1, sup... 160 3e-50
gb|AAM63908.1| unknown [Arabidopsis thaliana] 160 3e-50
pir||G96535 hypothetical protein F10F5.3 [imported] - Arabidopsi... 120 3e-38
dbj|BAA95045.1| unnamed protein product [Mus musculus] 100 9e-23
gb|AAH23941.1| Unknown (protein for MGC:35826) [Mus musculus] 100 9e-23
>ref|NP_564557.1| expressed protein; protein id: At1g49880.1, supported by cDNA:
28651. [Arabidopsis thaliana]
gi|26451041|dbj|BAC42626.1| unknown protein [Arabidopsis
thaliana] gi|28372928|gb|AAO39946.1| At1g49880
[Arabidopsis thaliana]
Length = 191
Score = 160 bits (405), Expect(2) = 3e-50
Identities = 72/92 (78%), Positives = 81/92 (87%)
Frame = -2
Query: 565 LQGKSAPPVTKEELGRATWTFLHTLAAQYPDNPTRQQKKDVKELVQILSRLYPCKECADH 386
L+ KS PVTKE+LGRATWTFLHTLAAQYP+ PTRQQKKDVKEL+ ILSR+YPC+ECADH
Sbjct: 66 LKDKSTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADH 125
Query: 385 FKEVLRANPVQAESHAQFSHWLCHVHNVVNRS 290
FKE+LR+NP QA S +FS WLCHVHN VNRS
Sbjct: 126 FKEILRSNPAQAGSQEEFSQWLCHVHNTVNRS 157
Score = 60.1 bits (144), Expect(2) = 3e-50
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = -3
Query: 291 ALGKPVFPCERVDARWGKLECEQKACEIIGSTSFF 187
+LGK VFPCERVDARWGKLECEQK+C++ G++ F
Sbjct: 157 SLGKLVFPCERVDARWGKLECEQKSCDLHGTSMDF 191
>gb|AAM63908.1| unknown [Arabidopsis thaliana]
Length = 190
Score = 160 bits (405), Expect(2) = 3e-50
Identities = 72/92 (78%), Positives = 81/92 (87%)
Frame = -2
Query: 565 LQGKSAPPVTKEELGRATWTFLHTLAAQYPDNPTRQQKKDVKELVQILSRLYPCKECADH 386
L+ KS PVTKE+LGRATWTFLHTLAAQYP+ PTRQQKKDVKEL+ ILSR+YPC+ECADH
Sbjct: 65 LKDKSTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADH 124
Query: 385 FKEVLRANPVQAESHAQFSHWLCHVHNVVNRS 290
FKE+LR+NP QA S +FS WLCHVHN VNRS
Sbjct: 125 FKEILRSNPAQAGSQEEFSQWLCHVHNTVNRS 156
Score = 60.1 bits (144), Expect(2) = 3e-50
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = -3
Query: 291 ALGKPVFPCERVDARWGKLECEQKACEIIGSTSFF 187
+LGK VFPCERVDARWGKLECEQK+C++ G++ F
Sbjct: 156 SLGKLVFPCERVDARWGKLECEQKSCDLHGTSMDF 190
>pir||G96535 hypothetical protein F10F5.3 [imported] - Arabidopsis thaliana
gi|12323604|gb|AAG51780.1|AC079674_13 hypothetical
protein; 32417-34250 [Arabidopsis thaliana]
Length = 175
Score = 120 bits (301), Expect(2) = 3e-38
Identities = 58/92 (63%), Positives = 66/92 (71%)
Frame = -2
Query: 565 LQGKSAPPVTKEELGRATWTFLHTLAAQYPDNPTRQQKKDVKELVQILSRLYPCKECADH 386
L+ KS PVTKE+LGRATWTFLHTLAAQ + ILSR+YPC+ECADH
Sbjct: 66 LKDKSTGPVTKEDLGRATWTFLHTLAAQ----------------MTILSRMYPCRECADH 109
Query: 385 FKEVLRANPVQAESHAQFSHWLCHVHNVVNRS 290
FKE+LR+NP QA S +FS WLCHVHN VNRS
Sbjct: 110 FKEILRSNPAQAGSQEEFSQWLCHVHNTVNRS 141
Score = 60.1 bits (144), Expect(2) = 3e-38
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = -3
Query: 291 ALGKPVFPCERVDARWGKLECEQKACEIIGSTSFF 187
+LGK VFPCERVDARWGKLECEQK+C++ G++ F
Sbjct: 141 SLGKLVFPCERVDARWGKLECEQKSCDLHGTSMDF 175
>dbj|BAA95045.1| unnamed protein product [Mus musculus]
Length = 198
Score = 99.8 bits (247), Expect(2) = 9e-23
Identities = 41/84 (48%), Positives = 56/84 (65%)
Frame = -2
Query: 544 PVTKEELGRATWTFLHTLAAQYPDNPTRQQKKDVKELVQILSRLYPCKECADHFKEVLRA 365
P +EELGR TW FLHTLAA YPD PT +Q++D+ + + I S+ YPC+ECA+ ++ +
Sbjct: 89 PQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIGR 148
Query: 364 NPVQAESHAQFSHWLCHVHNVVNR 293
N + FS WLC +HN VNR
Sbjct: 149 NQPDTSTRVSFSQWLCRLHNEVNR 172
Score = 28.9 bits (63), Expect(2) = 9e-23
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 288 LGKPVFPCERVDARW 244
LGKP F C RVD RW
Sbjct: 174 LGKPDFDCSRVDERW 188
>gb|AAH23941.1| Unknown (protein for MGC:35826) [Mus musculus]
Length = 198
Score = 99.8 bits (247), Expect(2) = 9e-23
Identities = 41/84 (48%), Positives = 56/84 (65%)
Frame = -2
Query: 544 PVTKEELGRATWTFLHTLAAQYPDNPTRQQKKDVKELVQILSRLYPCKECADHFKEVLRA 365
P +EELGR TW FLHTLAA YPD PT +Q++D+ + + I S+ YPC+ECA+ ++ +
Sbjct: 89 PQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIGR 148
Query: 364 NPVQAESHAQFSHWLCHVHNVVNR 293
N + FS WLC +HN VNR
Sbjct: 149 NQPDTSTRVSFSQWLCRLHNEVNR 172
Score = 28.9 bits (63), Expect(2) = 9e-23
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 288 LGKPVFPCERVDARW 244
LGKP F C RVD RW
Sbjct: 174 LGKPDFDCSRVDERW 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,138,840
Number of Sequences: 1393205
Number of extensions: 11038234
Number of successful extensions: 27226
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 26233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27218
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
