Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009408A_C01 KMC009408A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL66964.1| unknown protein [Arabidopsis thaliana] 77 1e-13
ref|NP_182024.2| unknown protein; protein id: At2g44970.1, suppo... 77 1e-13
pir||T00396 hypothetical protein At2g44970 [imported] - Arabidop... 77 1e-13
ref|NP_653723.1| hypothetical protein predicted by GeneMark [Bac... 33 1.4
ref|NP_794577.1| esterase/lipase/thioesterase family protein [Ps... 33 1.8
>gb|AAL66964.1| unknown protein [Arabidopsis thaliana]
Length = 503
Score = 76.6 bits (187), Expect = 1e-13
Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 5/60 (8%)
Frame = -3
Query: 493 EIIEYIEETYWGSKKRVLLLGHSK-GVHAAAALSLYWYDLNE----IGIAQSPYGGTPIA 329
EI EYIEE WGS KRVLLLGHSK G+ AAAALSLYW +L + + +AQSPYGG+PIA
Sbjct: 259 EIKEYIEELCWGSNKRVLLLGHSKGGIDAAAALSLYWPELKDKVAGLVLAQSPYGGSPIA 318
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 6/45 (13%)
Frame = -3
Query: 298 SVVVGPKQKMDHAWTVYTPLN------DASQVCEALLSLLVEMAE 182
SVVV PK+K+DHAW VY+ LN DA+QVCEALL+LLV++ +
Sbjct: 448 SVVVRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQ 492
>ref|NP_182024.2| unknown protein; protein id: At2g44970.1, supported by cDNA:
gi_18377627 [Arabidopsis thaliana]
gi|25054931|gb|AAN71942.1| unknown protein [Arabidopsis
thaliana]
Length = 503
Score = 76.6 bits (187), Expect = 1e-13
Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 5/60 (8%)
Frame = -3
Query: 493 EIIEYIEETYWGSKKRVLLLGHSK-GVHAAAALSLYWYDLNE----IGIAQSPYGGTPIA 329
EI EYIEE WGS KRVLLLGHSK G+ AAAALSLYW +L + + +AQSPYGG+PIA
Sbjct: 259 EIKEYIEELCWGSNKRVLLLGHSKGGIDAAAALSLYWPELKDKVAGLVLAQSPYGGSPIA 318
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 6/45 (13%)
Frame = -3
Query: 298 SVVVGPKQKMDHAWTVYTPLN------DASQVCEALLSLLVEMAE 182
SVVV PK+K+DHAW VY+ LN DA+QVCEALL+LLV++ +
Sbjct: 448 SVVVRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQ 492
>pir||T00396 hypothetical protein At2g44970 [imported] - Arabidopsis thaliana
gi|20196918|gb|AAM14832.1| unknown protein [Arabidopsis
thaliana]
Length = 461
Score = 76.6 bits (187), Expect = 1e-13
Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 5/60 (8%)
Frame = -3
Query: 493 EIIEYIEETYWGSKKRVLLLGHSK-GVHAAAALSLYWYDLNE----IGIAQSPYGGTPIA 329
EI EYIEE WGS KRVLLLGHSK G+ AAAALSLYW +L + + +AQSPYGG+PIA
Sbjct: 217 EIKEYIEELCWGSNKRVLLLGHSKGGIDAAAALSLYWPELKDKVAGLVLAQSPYGGSPIA 276
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 6/45 (13%)
Frame = -3
Query: 298 SVVVGPKQKMDHAWTVYTPLN------DASQVCEALLSLLVEMAE 182
SVVV PK+K+DHAW VY+ LN DA+QVCEALL+LLV++ +
Sbjct: 406 SVVVRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQ 450
>ref|NP_653723.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 447
Score = 33.5 bits (75), Expect = 1.4
Identities = 26/79 (32%), Positives = 39/79 (48%), Gaps = 1/79 (1%)
Frame = -3
Query: 499 MSEIIEYIEETYWGSKKRVLLLGHSKGVHAAAALSLYWYDLNEI-GIAQSPYGGTPIAQT 323
+S +I+YI Y ++V +G SKG +AA +L +Y N I G QS G I Q
Sbjct: 195 VSSLIQYIMAKYKICHEQVTAIGSSKGGYAAVYFALKYYFGNVIAGAPQSKLGHFLINQA 254
Query: 322 RYDGTPIASVVVGPKQKMD 266
+ IA + G ++ D
Sbjct: 255 NHKN--IARYIAGGDEESD 271
>ref|NP_794577.1| esterase/lipase/thioesterase family protein [Pseudomonas syringae
pv. tomato str. DC3000] gi|28855211|gb|AAO58272.1|
esterase/lipase/thioesterase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 302
Score = 33.1 bits (74), Expect = 1.8
Identities = 23/64 (35%), Positives = 30/64 (45%)
Frame = -3
Query: 472 ETYWGSKKRVLLLGHSKGVHAAAALSLYWYDLNEIGIAQSPYGGTPIAQTRYDGTPIASV 293
+TY G R+ ++GHS G + AA L+L L G+A S G YD PI
Sbjct: 131 KTYGGDPDRLYVMGHSAGAYNAAMLALDPRWLAREGLAPSILSGWIGLAGPYDFLPIEEE 190
Query: 292 VVGP 281
V P
Sbjct: 191 EVKP 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,677,402
Number of Sequences: 1393205
Number of extensions: 9204902
Number of successful extensions: 19129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19093
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
