Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009402A_C01 KMC009402A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73867.1|AF503361_1 putative NADH-dependent hydroxypyruvate... 360 6e-99
gb|AAO73866.1|AF503360_1 putative NADH-dependent hydroxypyruvate... 355 2e-97
dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorrhiza] 355 2e-97
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase (NADH-dependent hyd... 355 2e-97
pir||S68164 glycerate dehydrogenase (EC 1.1.1.29) splice form HP... 352 2e-96
>gb|AAO73867.1|AF503361_1 putative NADH-dependent hydroxypyruvate reductase [Glycine max]
Length = 386
Score = 360 bits (924), Expect = 6e-99
Identities = 179/184 (97%), Positives = 182/184 (98%)
Frame = +3
Query: 3 VWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGEKCDGVIG 182
VWNPSGKYRVVSTKPMPGTRWINLLIQ D RLEICTEKKTILSVEDIIALIG+KCDGVIG
Sbjct: 9 VWNPSGKYRVVSTKPMPGTRWINLLIQNDVRLEICTEKKTILSVEDIIALIGDKCDGVIG 68
Query: 183 QLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 362
QLTEDWGEELFSALS+AGGKAFSNMAVGYNNVDV+AANKYGVAVGNTPGVLTETTAELAA
Sbjct: 69 QLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLTETTAELAA 128
Query: 363 SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 542
SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF
Sbjct: 129 SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
Query: 543 KMNL 554
KMNL
Sbjct: 189 KMNL 192
>gb|AAO73866.1|AF503360_1 putative NADH-dependent hydroxypyruvate reductase [Glycine max]
Length = 386
Score = 355 bits (912), Expect = 2e-97
Identities = 175/184 (95%), Positives = 181/184 (98%)
Frame = +3
Query: 3 VWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGEKCDGVIG 182
VWNPSGKYRVVSTKPMPGTRWINLL+Q D RLEICTEKKTILSVEDIIALIG+KCDGVIG
Sbjct: 9 VWNPSGKYRVVSTKPMPGTRWINLLVQNDVRLEICTEKKTILSVEDIIALIGDKCDGVIG 68
Query: 183 QLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 362
QLTEDWGE+LFS LS+AGGKAFSNMAVGYNNVDV+AANKYGVAVGNTPGVLTETTAELAA
Sbjct: 69 QLTEDWGEQLFSTLSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLTETTAELAA 128
Query: 363 SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 542
SL+LAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF
Sbjct: 129 SLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
Query: 543 KMNL 554
KMNL
Sbjct: 189 KMNL 192
>dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorrhiza]
Length = 386
Score = 355 bits (912), Expect = 2e-97
Identities = 174/184 (94%), Positives = 182/184 (98%)
Frame = +3
Query: 3 VWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGEKCDGVIG 182
VWNP G+YRVVSTKPMPGTRWINLL+QQDCRLEICTEKKTILSVEDIIAL+G+KCDGVIG
Sbjct: 9 VWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMGDKCDGVIG 68
Query: 183 QLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 362
QLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA
Sbjct: 69 QLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 128
Query: 363 SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 542
SL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF
Sbjct: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
Query: 543 KMNL 554
KMNL
Sbjct: 189 KMNL 192
>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase (NADH-dependent hydroxypyruvate reductase)
(HPR) (GDH) gi|65955|pir||DEKVG glycerate dehydrogenase
(EC 1.1.1.29) - cucumber gi|18264|emb|CAA41434.1|
NADH-dependent hydroxypyruvate reductase [Cucumis
sativus] gi|18275|emb|CAA32764.1| NAPH-dependent
hydroxypyruvate reductase (AA 1 - 382) [Cucumis sativus]
Length = 382
Score = 355 bits (912), Expect = 2e-97
Identities = 175/184 (95%), Positives = 182/184 (98%)
Frame = +3
Query: 3 VWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGEKCDGVIG 182
VWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICTEKKTILSVEDI+ALIG+KCDGVIG
Sbjct: 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKCDGVIG 68
Query: 183 QLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 362
QLTEDWGE LFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA
Sbjct: 69 QLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 128
Query: 363 SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 542
SL+LAAARRIVEADEFMRAG YDGWLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF
Sbjct: 129 SLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
Query: 543 KMNL 554
KMNL
Sbjct: 189 KMNL 192
>pir||S68164 glycerate dehydrogenase (EC 1.1.1.29) splice form HPR1, microbody -
Cucurbita cv. Kurokawa Amakuri
gi|1304042|dbj|BAA08410.1| hydroxypyruvate reductase
[Cucurbita cv. Kurokawa Amakuri]
Length = 386
Score = 352 bits (902), Expect = 2e-96
Identities = 173/184 (94%), Positives = 181/184 (98%)
Frame = +3
Query: 3 VWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGEKCDGVIG 182
VWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICTEKKTILSVEDI+ALIG+KCDGVIG
Sbjct: 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVALIGDKCDGVIG 68
Query: 183 QLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAA 362
QLTEDWGE LFSALSRAG KAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLTETTAELAA
Sbjct: 69 QLTEDWGEVLFSALSRAGCKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA 128
Query: 363 SLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 542
SL+LAAARRIVEADEFMRAG YDGWLP+LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF
Sbjct: 129 SLSLAAARRIVEADEFMRAGHYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
Query: 543 KMNL 554
KMNL
Sbjct: 189 KMNL 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,396,899
Number of Sequences: 1393205
Number of extensions: 10084848
Number of successful extensions: 36275
Number of sequences better than 10.0: 660
Number of HSP's better than 10.0 without gapping: 33687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35470
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
