Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009367A_C01 KMC009367A_c01
(810 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) gi|4887131|gb|... 423 e-117
ref|NP_187574.1| putative 60S ribosomal protein L1; protein id: ... 411 e-114
dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thal... 411 e-114
ref|NP_195907.1| 60S ribosomal protein - like; protein id: At5g0... 411 e-114
gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thal... 405 e-112
>sp|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1) gi|4887131|gb|AAD32206.1|AF134732_1
60S ribosomal protein L1 [Prunus armeniaca]
Length = 408
Score = 423 bits (1088), Expect = e-117
Identities = 206/242 (85%), Positives = 225/242 (92%)
Frame = +2
Query: 83 AAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRA 262
AAARPLVTVQ+LEGDM D T+ +PDVM+ASIRPDIV FVHSNISKNSRQPYAVS++A
Sbjct: 6 AAARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKA 65
Query: 263 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 442
GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 66 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 125
Query: 443 QKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIGAFP 622
QKR+A+VSAIAASAVPSLVLARGH+IETVPE PLVVSDS EGVE++ A+KVLKQIGA+
Sbjct: 126 QKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYS 185
Query: 623 DAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNIPGVEVAXVERLNL 802
DAEKAKDS IRPGKGKMRNRRYI+R+GPL+VYGTEGAK VKAFRNIPG+++ VERLNL
Sbjct: 186 DAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNL 245
Query: 803 LK 808
LK
Sbjct: 246 LK 247
>ref|NP_187574.1| putative 60S ribosomal protein L1; protein id: At3g09630.1,
supported by cDNA: 39947., supported by cDNA:
gi_15982714 [Arabidopsis thaliana]
gi|17369604|sp|Q9SF40|RL4B_ARATH 60S ribosomal protein
L4-2 (L1) gi|6682241|gb|AAF23293.1|AC016661_18 putative
60S ribosomal protein L1 [Arabidopsis thaliana]
gi|15982715|gb|AAL09727.1| AT3g09630/F11F8_22
[Arabidopsis thaliana] gi|27311665|gb|AAO00798.1|
putative 60S ribosomal protein L1 [Arabidopsis thaliana]
Length = 406
Score = 411 bits (1057), Expect = e-114
Identities = 198/245 (80%), Positives = 223/245 (90%)
Frame = +2
Query: 74 ISMAAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVS 253
++ AAARPLVT+Q L+GDM D +ST+ +PDVM A +RPDIVNFVH+ IS NSRQPYAVS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 254 RRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 433
++AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Query: 434 NVNQKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIG 613
NVN KRHA+VSAIAA+AVP+LV+ARGH+IE VPE PLVVSDSAE VEK+ AIKVLKQIG
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180
Query: 614 AFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNIPGVEVAXVER 793
A+ DAEKAK+S GIRPGKGKMRNRRYISR+GPLVVYGTEG+K VKAFRN+PGVE+ VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240
Query: 794 LNLLK 808
LNLLK
Sbjct: 241 LNLLK 245
>dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thaliana]
Length = 407
Score = 411 bits (1057), Expect = e-114
Identities = 198/245 (80%), Positives = 223/245 (90%)
Frame = +2
Query: 74 ISMAAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVS 253
++ AAARPLVTVQ L+GDM D ++T+ +PDVM A +RPDIVNFVH+ IS NSRQPYAVS
Sbjct: 2 VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61
Query: 254 RRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 433
++AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121
Query: 434 NVNQKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIG 613
NVN KRHA+VSAIAA+AVP+LV+ARGH+IE VPE PLVVSDSAE VEK+ AIKVLKQIG
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181
Query: 614 AFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNIPGVEVAXVER 793
A+ DAEKAK+S GIRPGKGKMRNRRYISR+GPLVV+GTEGAK VKAFRN+PGVE+ VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241
Query: 794 LNLLK 808
LNLLK
Sbjct: 242 LNLLK 246
>ref|NP_195907.1| 60S ribosomal protein - like; protein id: At5g02870.1, supported by
cDNA: gi_13605830, supported by cDNA: gi_15450797,
supported by cDNA: gi_16649032, supported by cDNA:
gi_17064751, supported by cDNA: gi_20260071 [Arabidopsis
thaliana] gi|20143905|sp|P49691|RL4A_ARATH 60S ribosomal
protein L4-1 (L1) gi|11276668|pir||T48308 60S ribosomal
protein-like - Arabidopsis thaliana
gi|7413562|emb|CAB86041.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|15450798|gb|AAK96670.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|16649033|gb|AAL24368.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|17064752|gb|AAL32530.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
gi|20260072|gb|AAM13383.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|21387109|gb|AAM47958.1| 60S
ribosomal protein-like protein [Arabidopsis thaliana]
gi|22530964|gb|AAM96986.1| 60S ribosomal protein-like
[Arabidopsis thaliana] gi|25083642|gb|AAN72099.1| 60S
ribosomal protein-like [Arabidopsis thaliana]
Length = 407
Score = 411 bits (1057), Expect = e-114
Identities = 198/245 (80%), Positives = 223/245 (90%)
Frame = +2
Query: 74 ISMAAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVS 253
++ AAARPLVTVQ L+GDM D ++T+ +PDVM A +RPDIVNFVH+ IS NSRQPYAVS
Sbjct: 2 VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61
Query: 254 RRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 433
++AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121
Query: 434 NVNQKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIG 613
NVN KRHA+VSAIAA+AVP+LV+ARGH+IE VPE PLVVSDSAE VEK+ AIKVLKQIG
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181
Query: 614 AFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNIPGVEVAXVER 793
A+ DAEKAK+S GIRPGKGKMRNRRYISR+GPLVV+GTEGAK VKAFRN+PGVE+ VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241
Query: 794 LNLLK 808
LNLLK
Sbjct: 242 LNLLK 246
>gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thaliana]
Length = 406
Score = 405 bits (1040), Expect = e-112
Identities = 196/245 (80%), Positives = 222/245 (90%)
Frame = +2
Query: 74 ISMAAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVS 253
++ AAARPLVT+Q L+GD+ D +ST+ +PDVM A +RPDIVNFVH+ IS NSRQPYAVS
Sbjct: 1 MAAAAARPLVTIQTLDGDISTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 254 RRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 433
++AGHQTSAES GTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61 KKAGHQTSAESCGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Query: 434 NVNQKRHALVSAIAASAVPSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIG 613
NVN KRHA+VSAIAA+AVP+LV+ARGH+IE VPE PLVVSDSAE VEK+ AIKVLKQIG
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180
Query: 614 AFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNIPGVEVAXVER 793
A+ DAEKAK+S GIRPGKGKMRNRRYISR+GPLVVYGTEG+K VKAFRN+PGVE+ VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240
Query: 794 LNLLK 808
LNLLK
Sbjct: 241 LNLLK 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 890,497,596
Number of Sequences: 1393205
Number of extensions: 27548627
Number of successful extensions: 313193
Number of sequences better than 10.0: 5506
Number of HSP's better than 10.0 without gapping: 130936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232625
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
