Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009364A_C01 KMC009364A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA13126.1| z12r [Vibrio cholerae] 33 1.8
ref|NP_231568.1| GGDEF family protein [Vibrio cholerae] gi|11354... 33 1.8
emb|CAB55384.1| hypothetical protein L7836.09 [Leishmania major] 33 1.8
ref|NP_703752.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.8
ref|NP_419564.1| OmpA family protein [Caulobacter crescentus CB1... 33 2.4
>emb|CAA13126.1| z12r [Vibrio cholerae]
Length = 112
Score = 33.5 bits (75), Expect = 1.8
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = +1
Query: 106 IMIIDYLMQRKVRFNLNTPHPWGSSIDFLPHVKFDKAHDHKSFMTNIN 249
+ II+ L + KVRF L+ SS+ L H+KF K KSF+ N+N
Sbjct: 10 LAIIESLEKMKVRFALDDFGTGWSSLYQLNHLKFSKLKIDKSFVDNMN 57
>ref|NP_231568.1| GGDEF family protein [Vibrio cholerae] gi|11354956|pir||F82138
GGDEF family protein VC1934 [imported] - Vibrio cholerae
(strain N16961 serogroup O1) gi|9656471|gb|AAF95082.1|
GGDEF family protein [Vibrio cholerae]
Length = 655
Score = 33.5 bits (75), Expect = 1.8
Identities = 20/48 (41%), Positives = 28/48 (57%)
Frame = +1
Query: 106 IMIIDYLMQRKVRFNLNTPHPWGSSIDFLPHVKFDKAHDHKSFMTNIN 249
+ II+ L + KVRF L+ SS+ L H+KF K KSF+ N+N
Sbjct: 528 LAIIESLEKMKVRFALDDFGTGWSSLYQLNHLKFSKLKIDKSFVDNMN 575
>emb|CAB55384.1| hypothetical protein L7836.09 [Leishmania major]
Length = 1016
Score = 33.5 bits (75), Expect = 1.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 383 SHAMNELGLINLTNTTPTPTPQLPPLPHS 469
S ++N+LG++ + +P P P LPPLP S
Sbjct: 716 SRSINDLGVVLFSEWSPKPLPGLPPLPQS 744
>ref|NP_703752.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498413|emb|CAD50364.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 6077
Score = 33.5 bits (75), Expect = 1.8
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Frame = +1
Query: 61 ICRYYIKNINIYIYHIMIIDYLMQ-RKVRFNLNTPHP-----------WGSSIDFLPHVK 204
I ++ +KNINI+I H++I +YLM+ ++ + +N + S+ +F H K
Sbjct: 5425 ISKWILKNINIFINHLIINNYLMKSNEIAYEVNNFTTNNHNLIYKCLCYSSTCNFTKHRK 5484
Query: 205 FDKAHDHKSFMTNINFIFFFCWQLKDCMNRQLPPMHIVDPFNF 333
K++ H + M +++ KD N + +H +P F
Sbjct: 5485 -TKSNHHNNIMMHVDKSKKNNHTKKDFFNMKNNDLHNKNPLLF 5526
>ref|NP_419564.1| OmpA family protein [Caulobacter crescentus CB15]
gi|25400585|pir||H87341 OmpA family protein [imported] -
Caulobacter crescentus gi|13421980|gb|AAK22732.1| OmpA
family protein [Caulobacter crescentus CB15]
Length = 407
Score = 33.1 bits (74), Expect = 2.4
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 428 TPTPTPQLPPLPHSPLT*LIPFTPISLPEINTLYLLFPF 544
TPTPTPQ PPL +P IP P+ E + FPF
Sbjct: 269 TPTPTPQPPPLEPTPTPPPIP-PPVQAFEPREFVVYFPF 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,904,206
Number of Sequences: 1393205
Number of extensions: 11867416
Number of successful extensions: 40154
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 34504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39469
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
