Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009341A_C01 KMC009341A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC03675.1| SRPK1 [Arabidopsis thaliana] 135 3e-31
ref|NP_195275.1| protein kinase - like protein; protein id: At4g... 135 3e-31
ref|NP_179344.1| putative protein kinase; protein id: At2g17530.... 135 3e-31
dbj|BAC07147.1| contains ESTs AU094020(E1880),AU094021(E1880)~si... 114 8e-25
emb|CAC03678.1| SRPK4 [Arabidopsis thaliana] 108 6e-23
>emb|CAC03675.1| SRPK1 [Arabidopsis thaliana]
Length = 438
Score = 135 bits (341), Expect = 3e-31
Identities = 69/106 (65%), Positives = 83/106 (78%)
Frame = -3
Query: 559 LGKIPRKIAISGVQSKDFFDRHGDLKRIRRLKFVPLDKLLIDRYKFSVNDACEFSEFLLP 380
LGK+PRKIAI G +SKD+FDRHGDLKRIRRLK+ PLD+LLID+YK +A EF+EFL+P
Sbjct: 336 LGKMPRKIAIGGAKSKDYFDRHGDLKRIRRLKYWPLDRLLIDKYKLPEAEAKEFAEFLIP 395
Query: 379 LLNFATEKRPTAQQCLQHPWLDCNDSTPNESTVEKVGVGMSNLKIK 242
L FA EKRPTAQQCL HPW+ N +T N++ E V M+NL IK
Sbjct: 396 TLEFAPEKRPTAQQCLDHPWM--NVTTQNDA--ENVDDQMNNLHIK 437
>ref|NP_195275.1| protein kinase - like protein; protein id: At4g35500.1 [Arabidopsis
thaliana] gi|7488265|pir||T04655 protein kinase homolog
F8D20.10 - Arabidopsis thaliana
gi|3367568|emb|CAA20020.1| protein kinase - like protein
[Arabidopsis thaliana] gi|7270501|emb|CAB80266.1|
protein kinase-like protein [Arabidopsis thaliana]
gi|26452883|dbj|BAC43520.1| putative protein kinase
[Arabidopsis thaliana] gi|28972997|gb|AAO63823.1|
putative protein kinase [Arabidopsis thaliana]
Length = 438
Score = 135 bits (341), Expect = 3e-31
Identities = 69/106 (65%), Positives = 83/106 (78%)
Frame = -3
Query: 559 LGKIPRKIAISGVQSKDFFDRHGDLKRIRRLKFVPLDKLLIDRYKFSVNDACEFSEFLLP 380
LGK+PRKIAI G +SKD+FDRHGDLKRIRRLK+ PLD+LLID+YK +A EF+EFL P
Sbjct: 336 LGKMPRKIAIGGAKSKDYFDRHGDLKRIRRLKYWPLDRLLIDKYKLPEAEAKEFAEFLTP 395
Query: 379 LLNFATEKRPTAQQCLQHPWLDCNDSTPNESTVEKVGVGMSNLKIK 242
+L FA EKRPTAQQCL HPW+ N +T N++ E V M+NL IK
Sbjct: 396 ILEFAPEKRPTAQQCLDHPWM--NVTTQNDA--ENVDDQMNNLHIK 437
>ref|NP_179344.1| putative protein kinase; protein id: At2g17530.1 [Arabidopsis
thaliana] gi|25287653|pir||C84553 probable protein
kinase [imported] - Arabidopsis thaliana
gi|4914374|gb|AAD32910.1| putative protein kinase
[Arabidopsis thaliana] gi|9843645|emb|CAC03676.1| SRPK2
[Arabidopsis thaliana]
Length = 440
Score = 135 bits (340), Expect = 3e-31
Identities = 67/106 (63%), Positives = 83/106 (78%)
Frame = -3
Query: 559 LGKIPRKIAISGVQSKDFFDRHGDLKRIRRLKFVPLDKLLIDRYKFSVNDACEFSEFLLP 380
LGK+PRKIAI G +SKD+FDRHGDLKRIRRLK+ PLD+LLID+YK +A EF++FL P
Sbjct: 335 LGKMPRKIAIGGARSKDYFDRHGDLKRIRRLKYWPLDRLLIDKYKLPEAEAREFADFLCP 394
Query: 379 LLNFATEKRPTAQQCLQHPWLDCNDSTPNESTVEKVGVGMSNLKIK 242
+++FA EKRPTAQQCLQHPWL+ NE +E MSN++IK
Sbjct: 395 IMDFAPEKRPTAQQCLQHPWLNLRTQN-NEDDIEG---QMSNMQIK 436
>dbj|BAC07147.1| contains ESTs AU094020(E1880),AU094021(E1880)~similar to protein
kinase SRPK2 (serine/arginine-rich protein-specific
kinase) [Oryza sativa (japonica cultivar-group)]
Length = 848
Score = 114 bits (285), Expect = 8e-25
Identities = 57/100 (57%), Positives = 72/100 (72%), Gaps = 4/100 (4%)
Frame = -3
Query: 544 RKIAISGVQSKDFFDRHGDLKRIRRLKFVPLDKLLIDRYKFSVNDACEFSEFLLPLLNFA 365
+KIA G +SK++FDRHGDLKRIRRLKF ++++L+D+YK S +DA EF+EFL PL +FA
Sbjct: 434 KKIATMGTKSKEYFDRHGDLKRIRRLKFSSIERVLVDKYKISESDAREFAEFLCPLFDFA 493
Query: 364 TEKRPTAQQCLQHPWLDCND----STPNESTVEKVGVGMS 257
EKRPTA QCLQH WL +D T N S V+ V S
Sbjct: 494 PEKRPTAAQCLQHKWLQYSDGKNYGTLNISDVKNASVTCS 533
>emb|CAC03678.1| SRPK4 [Arabidopsis thaliana]
Length = 529
Score = 108 bits (269), Expect = 6e-23
Identities = 47/82 (57%), Positives = 66/82 (80%)
Frame = -3
Query: 559 LGKIPRKIAISGVQSKDFFDRHGDLKRIRRLKFVPLDKLLIDRYKFSVNDACEFSEFLLP 380
LG +PRKIA+ G S+DFF+RHGDL+ IRRL+F P++K+L ++Y+FS DA + S+FL+
Sbjct: 386 LGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLTEKYEFSEQDANDLSDFLVS 445
Query: 379 LLNFATEKRPTAQQCLQHPWLD 314
+L+F EKRPTA QCL HPW++
Sbjct: 446 ILDFVPEKRPTAAQCLLHPWIN 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,195,891
Number of Sequences: 1393205
Number of extensions: 9062879
Number of successful extensions: 24099
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 23231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24090
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
