Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009332A_C01 KMC009332A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190449.1| hypothetical protein; protein id: At3g48800.1 [... 112 3e-24
ref|NP_197757.1| putative protein; protein id: At5g23680.1, supp... 111 4e-24
gb|AAO20060.1| hypothetical protein [Oryza sativa (japonica cult... 105 4e-22
gb|AAF69826.1|AF224746_1 bicaudal-C [Xenopus laevis] 54 1e-06
ref|XP_109169.2| bicaudal C homolog 1 [Mus musculus] 53 2e-06
>ref|NP_190449.1| hypothetical protein; protein id: At3g48800.1 [Arabidopsis
thaliana] gi|11288875|pir||T49276 hypothetical protein
T21J18.70 - Arabidopsis thaliana
gi|7576218|emb|CAB87908.1| hypothetical protein
[Arabidopsis thaliana]
Length = 278
Score = 112 bits (279), Expect = 3e-24
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = -3
Query: 509 GEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKL 330
G++GV+IWL LGLGRY P+FE+HEVD+EVLP+LTLEDLKDMGI+AVGSRRKM+CAIQKL
Sbjct: 214 GKEGVKIWLQELGLGRYWPMFEIHEVDEEVLPLLTLEDLKDMGINAVGSRRKMFCAIQKL 273
Query: 329 GKGFS 315
G+ FS
Sbjct: 274 GREFS 278
>ref|NP_197757.1| putative protein; protein id: At5g23680.1, supported by cDNA:
152842. [Arabidopsis thaliana]
gi|8809692|dbj|BAA97233.1| contains similarity to
unknown protein~emb|CAB87908.1~gene_id:MQM1.5
[Arabidopsis thaliana] gi|21553601|gb|AAM62694.1|
unknown [Arabidopsis thaliana]
Length = 295
Score = 111 bits (278), Expect = 4e-24
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = -3
Query: 509 GEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKL 330
G++GV+IWL LGLGRY P+FE+HEVD++VLP+LTLEDLKDMGI+AVGSRRKMYCAIQKL
Sbjct: 231 GKEGVKIWLQELGLGRYWPMFEMHEVDEQVLPLLTLEDLKDMGINAVGSRRKMYCAIQKL 290
Query: 329 GKGFS 315
G+ FS
Sbjct: 291 GREFS 295
>gb|AAO20060.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|28269410|gb|AAO37953.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 256
Score = 105 bits (261), Expect = 4e-22
Identities = 50/65 (76%), Positives = 56/65 (85%)
Frame = -3
Query: 509 GEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKL 330
G GV+ WL+GLGL RYAPVFE+HEVDDEVLP+LTLEDLKDMGI AVGSRRK+Y AIQKL
Sbjct: 190 GYGGVKAWLDGLGLSRYAPVFEIHEVDDEVLPLLTLEDLKDMGIGAVGSRRKLYAAIQKL 249
Query: 329 GKGFS 315
+ S
Sbjct: 250 QRSDS 254
>gb|AAF69826.1|AF224746_1 bicaudal-C [Xenopus laevis]
Length = 963
Score = 53.5 bits (127), Expect = 1e-06
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -3
Query: 476 LGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKLGK 324
LGLG+Y +F+ E+D + LT +DLK++GIS G+RRKM AI +L K
Sbjct: 874 LGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGISTFGARRKMLLAISELNK 924
>ref|XP_109169.2| bicaudal C homolog 1 [Mus musculus]
Length = 895
Score = 52.8 bits (125), Expect = 2e-06
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -3
Query: 476 LGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKLGK 324
LGLG+Y VF+ E+D + LT +DLK++GI+ G+RRKM AI +L K
Sbjct: 805 LGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELSK 855
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,974,469
Number of Sequences: 1393205
Number of extensions: 8990105
Number of successful extensions: 25743
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 24312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25655
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
