Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009324A_C01 KMC009324A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193761.1| putative protein; protein id: At4g20280.1, supp... 103 1e-21
pir||D86333 T20H2.22 protein - Arabidopsis thaliana gi|8778998|g... 100 2e-20
ref|NP_173429.1| hypothetical protein; protein id: At1g20000.1 [... 100 2e-20
pir||T05336 hypothetical protein F1C12.195 - Arabidopsis thalian... 95 4e-19
ref|NP_584650.1| TRANSCRIPTION INITIATION FACTOR TFIID 28kDa SUB... 59 4e-08
>ref|NP_193761.1| putative protein; protein id: At4g20280.1, supported by cDNA:
gi_13877756, supported by cDNA: gi_15293300, supported
by cDNA: gi_7638154 [Arabidopsis thaliana]
gi|7638155|gb|AAF65405.1|AF238326_1 putative TATA
binding protein associated factor 24kDa subunit
[Arabidopsis thaliana]
gi|13877757|gb|AAK43956.1|AF370141_1 unknown protein
[Arabidopsis thaliana] gi|15293301|gb|AAK93761.1|
unknown protein [Arabidopsis thaliana]
Length = 210
Score = 103 bits (257), Expect = 1e-21
Identities = 50/59 (84%), Positives = 55/59 (92%)
Frame = -1
Query: 510 IVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLFR 334
IV GIAKMFVGE+VETAR+V+ ERKESGPIRPCH+RE+YRRLKLEGKV KRSVPRLFR
Sbjct: 152 IVACGIAKMFVGELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210
>pir||D86333 T20H2.22 protein - Arabidopsis thaliana
gi|8778998|gb|AAF79913.1|AC022472_22 Contains similarity
to PRO2134 mRNA from Homo sapiens gb|AF118094.
[Arabidopsis thaliana]
Length = 233
Score = 99.8 bits (247), Expect = 2e-20
Identities = 47/61 (77%), Positives = 57/61 (93%)
Frame = -1
Query: 516 ITIVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLF 337
+ IVV GIAKMFVG++VETAR+V++ERKESGPIRPCH+RE+YRRLKL+GKV +RSV RLF
Sbjct: 173 MNIVVRGIAKMFVGDLVETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLF 232
Query: 336 R 334
R
Sbjct: 233 R 233
>ref|NP_173429.1| hypothetical protein; protein id: At1g20000.1 [Arabidopsis
thaliana]
Length = 204
Score = 99.8 bits (247), Expect = 2e-20
Identities = 47/61 (77%), Positives = 57/61 (93%)
Frame = -1
Query: 516 ITIVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLF 337
+ IVV GIAKMFVG++VETAR+V++ERKESGPIRPCH+RE+YRRLKL+GKV +RSV RLF
Sbjct: 144 MNIVVRGIAKMFVGDLVETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLF 203
Query: 336 R 334
R
Sbjct: 204 R 204
>pir||T05336 hypothetical protein F1C12.195 - Arabidopsis thaliana
gi|2982445|emb|CAA18253.1| putative protein [Arabidopsis
thaliana] gi|7268823|emb|CAB79028.1| putative protein
[Arabidopsis thaliana]
Length = 221
Score = 95.1 bits (235), Expect = 4e-19
Identities = 50/70 (71%), Positives = 55/70 (78%), Gaps = 11/70 (15%)
Frame = -1
Query: 510 IVVSGIAKMFVGEVVET-----------ARIVIKERKESGPIRPCHLREAYRRLKLEGKV 364
IV GIAKMFVGE+VET AR+V+ ERKESGPIRPCH+RE+YRRLKLEGKV
Sbjct: 152 IVACGIAKMFVGELVETGHLLNLNTLSVARVVMAERKESGPIRPCHIRESYRRLKLEGKV 211
Query: 363 FKRSVPRLFR 334
KRSVPRLFR
Sbjct: 212 PKRSVPRLFR 221
>ref|NP_584650.1| TRANSCRIPTION INITIATION FACTOR TFIID 28kDa SUBUNIT
[Encephalitozoon cuniculi] gi|19068686|emb|CAD25154.1|
TRANSCRIPTION INITIATION FACTOR TFIID 28kDa SUBUNIT
[Encephalitozoon cuniculi]
Length = 148
Score = 58.5 bits (140), Expect = 4e-08
Identities = 29/56 (51%), Positives = 40/56 (70%), Gaps = 3/56 (5%)
Frame = -1
Query: 510 IVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKL---EGKVFKRS 352
I V G+AK+FVGE++E A+ V +ER+E GP+ P H+ EAYRRL KVFK++
Sbjct: 89 IAVCGLAKVFVGEMIEIAKAVQEERREEGPLLPSHIHEAYRRLYKRIPNTKVFKKA 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,855,055
Number of Sequences: 1393205
Number of extensions: 9164706
Number of successful extensions: 18680
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 18309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18673
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
