Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009323A_C01 KMC009323A_c01
(432 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_656446.1| hypothetical protein predicted by GeneMark [Bac... 33 0.81
gb|AAG48574.1|AF253047_2 large subunit Cp complex Cdc68p [Candid... 32 1.8
gb|EAA19014.1| hypothetical protein [Plasmodium yoelii yoelii] 32 2.4
ref|NP_713794.1| TPR-repeat-containing proteins [Leptospira inte... 30 5.3
gb|AAN61438.1| metalloreductase [Emericella nidulans] 30 6.9
>ref|NP_656446.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 481
Score = 33.1 bits (74), Expect = 0.81
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +2
Query: 17 RRPTPKKNKIGAPQTH*YIHLKNPEKIQNLYF----DDKQDILIVYIHLHLFPLYDISSE 184
R+ + GAP + YI + IQ + F +D Q + IHL+L PLY I+SE
Sbjct: 246 RKSVVSYDNTGAP--YGYITANLEDMIQYIMFLNRPEDAQLLKQENIHLYLSPLYKINSE 303
Query: 185 TE--LNLRFKHIISSHVLVW 238
LR +I S ++W
Sbjct: 304 KSYGFGLRTTNINESETMIW 323
>gb|AAG48574.1|AF253047_2 large subunit Cp complex Cdc68p [Candida albicans]
Length = 1052
Score = 32.0 bits (71), Expect = 1.8
Identities = 23/72 (31%), Positives = 31/72 (42%), Gaps = 21/72 (29%)
Frame = +2
Query: 5 NKAIRRPTPKKNKIGA--------------PQTH*YIHLKNPEK-------IQNLYFDDK 121
N RPTP KIG PQ+ + KN ++ I++L+F
Sbjct: 693 NNVFIRPTPDTKKIGGVLQIHENGLRYQSQPQSQSQSNFKNDQRVDVLFSNIKHLFFQPC 752
Query: 122 QDILIVYIHLHL 157
+D LIV IH HL
Sbjct: 753 KDELIVLIHCHL 764
>gb|EAA19014.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 269
Score = 31.6 bits (70), Expect = 2.4
Identities = 13/47 (27%), Positives = 27/47 (56%)
Frame = +2
Query: 92 KIQNLYFDDKQDILIVYIHLHLFPLYDISSETELNLRFKHIISSHVL 232
+I+N ++KQ+++ +YI+ + F D + E+ R KH H++
Sbjct: 116 EIENCPTEEKQEMIDIYINKYKFDSKDARNLVEITFRNKHFFLEHMM 162
>ref|NP_713794.1| TPR-repeat-containing proteins [Leptospira interrogans serovar lai
str. 56601] gi|24197583|gb|AAN50812.1|AE011516_9
TPR-repeat-containing proteins [Leptospira interrogans
serovar lai str. 56601]
Length = 869
Score = 30.4 bits (67), Expect = 5.3
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +2
Query: 62 H*YIHLKNPEKIQNLYFDDKQDILIVYIHLHLFPLYDISSETELNLRFKHII 217
H ++ K P++ NL+F VYIHL +Y+++ + ++ ++++
Sbjct: 214 HFLLYFKRPQEKYNLFFGLFSTFFSVYIHLRSNAVYELNLDPLFQMKLEYMV 265
>gb|AAN61438.1| metalloreductase [Emericella nidulans]
Length = 599
Score = 30.0 bits (66), Expect = 6.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 321 QHHLRTHLILRRDEEVRYTASNSIMAFS 404
+HHLR +LR D++ +T N MA++
Sbjct: 48 RHHLRLRAVLRNDDQTPFTNRNGFMAWT 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,741,445
Number of Sequences: 1393205
Number of extensions: 7070637
Number of successful extensions: 15704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15703
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
