Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009320A_C01 KMC009320A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF16753.1|AC010155_6 F3M18.15 [Arabidopsis thaliana] 57 1e-07
ref|NP_174163.1| hypothetical protein; protein id: At1g28410.1 [... 39 0.060
ref|NP_567873.1| putative protein; protein id: At4g31340.1, supp... 35 0.67
gb|AAL47212.1| tumor-associated microtubule-associated protein [... 35 0.87
gb|AAL47213.1| tumor-associated microtubule-associated protein s... 35 0.87
>gb|AAF16753.1|AC010155_6 F3M18.15 [Arabidopsis thaliana]
Length = 311
Score = 57.4 bits (137), Expect = 1e-07
Identities = 26/42 (61%), Positives = 33/42 (77%)
Frame = -2
Query: 571 QLQGLIKDLMKRNELTAALANDELVFFLVSVLVTFPLMSAWI 446
QLQG I+ M+R E+TAALAN E+VFF+ S L+TFP+ AWI
Sbjct: 197 QLQGFIEHEMERTEITAALANREVVFFMASALITFPVFGAWI 238
>ref|NP_174163.1| hypothetical protein; protein id: At1g28410.1 [Arabidopsis
thaliana]
Length = 301
Score = 38.5 bits (88), Expect = 0.060
Identities = 18/28 (64%), Positives = 23/28 (81%)
Frame = -2
Query: 571 QLQGLIKDLMKRNELTAALANDELVFFL 488
QLQG I+ M+R E+TAALAN E+VFF+
Sbjct: 232 QLQGFIEHEMERTEITAALANREVVFFM 259
>ref|NP_567873.1| putative protein; protein id: At4g31340.1, supported by cDNA:
gi_14334773 [Arabidopsis thaliana]
gi|26983878|gb|AAN86191.1| unknown protein [Arabidopsis
thaliana]
Length = 437
Score = 35.0 bits (79), Expect = 0.67
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = -2
Query: 571 QLQGLIKDLMKRNELTAALANDELVFFLVSVLVTFPLMSAWIFLS 437
Q+Q ++ +K +ELT A +E V+F S L+ FP+ A+ LS
Sbjct: 364 QVQAHVERKLKSHELTEPFATNEFVWFAASALLVFPIFVAYRVLS 408
>gb|AAL47212.1| tumor-associated microtubule-associated protein [Homo sapiens]
Length = 682
Score = 34.7 bits (78), Expect = 0.87
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = +1
Query: 271 STVKIHTKKYSRLLATMQDQNYMSTITEKSVTCSLCTSIGRKPIRCHYRNLEATMVRGIS 450
S+V + + + S + AT + ++ST ++ T + R PIR H+ N T+ +GIS
Sbjct: 223 SSVTVKSNRSSNMTATTK---FVSTTSQN-------TQLVRPPIRSHHSNTRDTVKQGIS 272
Query: 451 RHSLMEK*LEQKPGKKLIHHLQELQSIHFSSS 546
R S + K+L+ L S+ SSS
Sbjct: 273 RTSANVTIRKGPHEKELLQSKTALSSVKTSSS 304
>gb|AAL47213.1| tumor-associated microtubule-associated protein splice variant
[Homo sapiens]
Length = 494
Score = 34.7 bits (78), Expect = 0.87
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = +1
Query: 271 STVKIHTKKYSRLLATMQDQNYMSTITEKSVTCSLCTSIGRKPIRCHYRNLEATMVRGIS 450
S+V + + + S + AT + ++ST ++ T + R PIR H+ N T+ +GIS
Sbjct: 223 SSVTVKSNRSSNMTATTK---FVSTTSQN-------TQLVRPPIRSHHSNTRDTVKQGIS 272
Query: 451 RHSLMEK*LEQKPGKKLIHHLQELQSIHFSSS 546
R S + K+L+ L S+ SSS
Sbjct: 273 RTSANVTIRKGPHEKELLQSKTALSSVKTSSS 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,222,887
Number of Sequences: 1393205
Number of extensions: 9257939
Number of successful extensions: 18927
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18917
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
