Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009310A_C01 KMC009310A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00443.1|AC060755_13 putative carnitine/acylcarnitine trans... 114 6e-25
dbj|BAB08924.1| carnitine/acylcarnitine translocase-like protein... 112 3e-24
ref|NP_568670.1| mitochondrial carrier protein family; protein i... 112 3e-24
gb|AAK00455.1|AC060755_25 putative carnitine/acylcarnitine trans... 109 3e-23
pir||T09109 envelope protein LIP-36G1, low CO2 inducible - Chlam... 65 4e-10
>gb|AAK00443.1|AC060755_13 putative carnitine/acylcarnitine translocase [Oryza sativa]
Length = 316
Score = 114 bits (286), Expect = 6e-25
Identities = 54/63 (85%), Positives = 61/63 (96%)
Frame = -3
Query: 562 KSVIQVDDYKYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRS 383
KSVIQVDDYK PK+SGS+DAFR+ILA++G+KGLYKGFGPAM RSVPANAACFLAYE+TRS
Sbjct: 254 KSVIQVDDYKNPKYSGSMDAFRKILAADGVKGLYKGFGPAMARSVPANAACFLAYEVTRS 313
Query: 382 ALG 374
ALG
Sbjct: 314 ALG 316
Score = 47.0 bits (110), Expect = 2e-04
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -3
Query: 526 KFSGSIDAFRRILASEG-IKGLYKGFGPAMFRSVPANAACFLAYEMTRSAL 377
K+ G +D +++L SEG + GL+KG GP + R VP NA F YE + L
Sbjct: 168 KYGGPVDVAKQVLRSEGGVGGLFKGLGPTLAREVPGNALMFGVYEAIKQYL 218
Score = 42.0 bits (97), Expect = 0.005
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -3
Query: 529 PKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACF 407
PKF+G++DA ++ LA+EG +GLYKG G + NA F
Sbjct: 44 PKFAGAMDAVKQTLAAEGPRGLYKGMGAPLATVAAFNALLF 84
>dbj|BAB08924.1| carnitine/acylcarnitine translocase-like protein [Arabidopsis
thaliana]
Length = 294
Score = 112 bits (280), Expect = 3e-24
Identities = 52/63 (82%), Positives = 60/63 (94%)
Frame = -3
Query: 562 KSVIQVDDYKYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRS 383
KSV+QVDDYK P+++GS+DAFR+IL SEG+KGLYKGFGPAM RSVPANAACFLAYEMTRS
Sbjct: 232 KSVLQVDDYKNPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTRS 291
Query: 382 ALG 374
+LG
Sbjct: 292 SLG 294
Score = 45.1 bits (105), Expect = 6e-04
Identities = 22/45 (48%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Frame = -3
Query: 526 KFSGSIDAFRRILASEG-IKGLYKGFGPAMFRSVPANAACFLAYE 395
K+ G +D R +L SEG +GL+KG P R VP NA F AYE
Sbjct: 146 KYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYE 190
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -3
Query: 529 PKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACF 407
P+++G+IDA ++ +ASEG KGLYKG G + NA F
Sbjct: 44 PRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLF 84
>ref|NP_568670.1| mitochondrial carrier protein family; protein id: At5g46800.1,
supported by cDNA: 13730. [Arabidopsis thaliana]
gi|24211999|sp|Q93XM7|MCAT_ARATH Mitochondrial
carnitine/acylcarnitine carrier-like protein (A BOUT DE
SOUFFLE) (Carnitine/acylcarnitine translocase-like
protein) (CAC-like protein) gi|13992452|emb|CAC38047.1|
carnitine acyl carrier-like protein [Arabidopsis
thaliana] gi|22531072|gb|AAM97040.1|
carnitine/acylcarnitine translocase-like protein
[Arabidopsis thaliana] gi|23197914|gb|AAN15484.1|
carnitine/acylcarnitine translocase-like protein
[Arabidopsis thaliana]
Length = 300
Score = 112 bits (280), Expect = 3e-24
Identities = 52/63 (82%), Positives = 60/63 (94%)
Frame = -3
Query: 562 KSVIQVDDYKYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRS 383
KSV+QVDDYK P+++GS+DAFR+IL SEG+KGLYKGFGPAM RSVPANAACFLAYEMTRS
Sbjct: 238 KSVLQVDDYKNPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTRS 297
Query: 382 ALG 374
+LG
Sbjct: 298 SLG 300
Score = 45.1 bits (105), Expect = 6e-04
Identities = 22/45 (48%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Frame = -3
Query: 526 KFSGSIDAFRRILASEG-IKGLYKGFGPAMFRSVPANAACFLAYE 395
K+ G +D R +L SEG +GL+KG P R VP NA F AYE
Sbjct: 152 KYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYE 196
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -3
Query: 529 PKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACF 407
P+++G+IDA ++ +ASEG KGLYKG G + NA F
Sbjct: 44 PRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLF 84
>gb|AAK00455.1|AC060755_25 putative carnitine/acylcarnitine translocase; tRNA-Gly; tRNA-Met
[Oryza sativa]
Length = 296
Score = 109 bits (272), Expect = 3e-23
Identities = 51/63 (80%), Positives = 60/63 (94%)
Frame = -3
Query: 562 KSVIQVDDYKYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRS 383
KSVIQVDDYK P++SGS+DAF++ILA++G+KGLYKGFGPAM RSVPANAA FLAYE+TRS
Sbjct: 234 KSVIQVDDYKKPRYSGSVDAFKKILAADGVKGLYKGFGPAMARSVPANAATFLAYEITRS 293
Query: 382 ALG 374
ALG
Sbjct: 294 ALG 296
Score = 44.7 bits (104), Expect = 8e-04
Identities = 21/47 (44%), Positives = 27/47 (56%)
Frame = -3
Query: 517 GSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRSAL 377
G ID + ++ G+KGL+KG P M R VP NA F YE T+ L
Sbjct: 152 GPIDVAKHVVREAGMKGLFKGLVPTMGREVPGNAVMFGVYEGTKQYL 198
Score = 42.4 bits (98), Expect = 0.004
Identities = 17/43 (39%), Positives = 29/43 (66%)
Frame = -3
Query: 535 KYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACF 407
++PK++G++DA ++ +A+EG +GLYKG G + NA F
Sbjct: 42 QFPKYAGAVDAVKQTIATEGPRGLYKGMGAPLATVAAFNALLF 84
>pir||T09109 envelope protein LIP-36G1, low CO2 inducible - Chlamydomonas
reinhardtii gi|2459573|gb|AAB71743.1| envelope protein
[Chlamydomonas reinhardtii]
Length = 358
Score = 65.5 bits (158), Expect = 4e-10
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -3
Query: 562 KSVIQVDDYKYPKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRS 383
KS +Q D + P++S ++D +++LASEG GL++GF AM+R++P NA FLA E TR
Sbjct: 273 KSKLQADSFAKPQYSSTMDCLKKVLASEGQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQ 332
Query: 382 AL 377
+
Sbjct: 333 GI 334
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = -3
Query: 523 FSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACFLAYEMT 389
+ GS+D F+++++ GIKGLY+GF + R + A FL YE T
Sbjct: 184 YKGSLDCFKQVMSKHGIKGLYRGFTSTILRDMQGYAWFFLGYEAT 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,210,522
Number of Sequences: 1393205
Number of extensions: 9224325
Number of successful extensions: 20251
Number of sequences better than 10.0: 702
Number of HSP's better than 10.0 without gapping: 18901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20241
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
