Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009304A_C01 KMC009304A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201355.1| unknown protein; protein id: At5g65520.1 [Arabi... 72 3e-12
gb|AAH09062.1|AAH09062 Unknown (protein for IMAGE:3875076) [Homo... 45 4e-04
dbj|BAA20782.2| KIAA0324 protein [Homo sapiens] 45 4e-04
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 45 4e-04
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus] 45 4e-04
>ref|NP_201355.1| unknown protein; protein id: At5g65520.1 [Arabidopsis thaliana]
gi|26453066|dbj|BAC43609.1| unknown protein [Arabidopsis
thaliana] gi|28973455|gb|AAO64052.1| unknown protein
[Arabidopsis thaliana]
Length = 206
Score = 72.0 bits (175), Expect = 3e-12
Identities = 50/141 (35%), Positives = 75/141 (52%), Gaps = 3/141 (2%)
Frame = +2
Query: 77 LQIFMIFLFIFVFLGIYGIPQRLFAKLRIPKPSQRRRQAPLRRGRSAPRTSQILQRPEPD 256
+Q ++ L + +F I + QR K R + +A L+ R + S++L R
Sbjct: 8 IQGAILVLTLVMFWAIKYLSQRGLTKFRT------KHRATLQTQRQLIQASRLLARARTT 61
Query: 257 PPPPPS---LKKP*PKPEKAIALDPKDAAAYLLKAMVLDLQGFTTSALESLDAALSPLAA 427
P S K + + IA+ P DAA ++++A+ LDL G TSAL+S D AL+
Sbjct: 62 PKKSQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRL 121
Query: 428 GSLASGERGDALLKRGELKLA 490
SL+ GER DAL+KR E+KLA
Sbjct: 122 KSLSVGERADALVKRAEMKLA 142
>gb|AAH09062.1|AAH09062 Unknown (protein for IMAGE:3875076) [Homo sapiens]
Length = 198
Score = 45.1 bits (105), Expect = 4e-04
Identities = 35/94 (37%), Positives = 48/94 (50%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPSSEFQNRASVDAKRHFGEGAQLLAQARSSNA 245
++S SS SSSSSSSS+S++S S S SS + +S + G Q L + S
Sbjct: 54 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKK 113
Query: 246 PNQIRHHLPR*RSLSRSPRKPSRSIRKTPRLTFS 347
P P SRSPRKP S+R + L++S
Sbjct: 114 P-------PPGERRSRSPRKPIDSLRDSRSLSYS 140
>dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]
Length = 1783
Score = 45.1 bits (105), Expect = 4e-04
Identities = 35/94 (37%), Positives = 48/94 (50%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPSSEFQNRASVDAKRHFGEGAQLLAQARSSNA 245
++S SS SSSSSSSS+S++S S S SS + +S + G Q L + S
Sbjct: 1639 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKK 1698
Query: 246 PNQIRHHLPR*RSLSRSPRKPSRSIRKTPRLTFS 347
P P SRSPRKP S+R + L++S
Sbjct: 1699 P-------PPGERRSRSPRKPIDSLRDSRSLSYS 1725
Score = 31.6 bits (70), Expect = 5.0
Identities = 30/126 (23%), Positives = 53/126 (41%), Gaps = 6/126 (4%)
Frame = +1
Query: 7 NPETQKKKRYGYGRETSDDARHRFTNLHDFPLHLRLPRHLRHPTAAIRQAPN------SK 168
+PE + K R ++ D+ P LPR R +++ + P+ ++
Sbjct: 632 SPEVKDKPRAAPRAQSGSDSSPE----PKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE 687
Query: 169 TEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHRARSERRRGLPSQ 348
+ P P + +AR S S P P+T+S T + + + + +AR RR S
Sbjct: 688 SSPEHPPKSRTARRGSRSS----PEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASS 743
Query: 349 SDGSRS 366
S +RS
Sbjct: 744 SPETRS 749
Score = 28.1 bits (61), Expect(2) = 0.19
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPS 155
++S SS SSSSSSSS+S++S SG S S
Sbjct: 1563 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 1592
Score = 27.7 bits (60), Expect(2) = 0.53
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPSSEFQNRASVDAKR 194
++S SS SSSSSSSS+S+ S S S S + V KR
Sbjct: 1567 SSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKR 1609
Score = 27.3 bits (59), Expect(2) = 0.41
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 69 TSVYKSS*FSSSSSSSSASTASHSGYSPSSE 161
+S SS SSSSSSSS+S++S S S SS+
Sbjct: 1563 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 1593
Score = 26.9 bits (58), Expect(2) = 0.19
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +1
Query: 133 PTAAIRQAPNSKTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHR 312
PT A ++A P TP+ R+ SSS + + S+++S + + + + S
Sbjct: 1613 PTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1672
Query: 313 ARSERRRGLPSQ 348
+ S P++
Sbjct: 1673 SSSSSSSPSPAK 1684
Score = 26.6 bits (57), Expect(2) = 0.41
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +1
Query: 133 PTAAIRQAPNSKTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHR 312
PT A R+ +S + +S+ S++S+ + SSS + + S+++S + + + A+ +
Sbjct: 1629 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQ 1688
Query: 313 A 315
A
Sbjct: 1689 A 1689
Score = 25.8 bits (55), Expect(2) = 0.53
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +1
Query: 166 KTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHRARSERRRGLPS 345
K P+ TP+ A +P P + RS+++S + + + + S + S S
Sbjct: 1608 KRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1667
Query: 346 QSDGSRST 369
S S S+
Sbjct: 1668 SSSSSSSS 1675
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 45.1 bits (105), Expect = 4e-04
Identities = 35/94 (37%), Positives = 48/94 (50%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPSSEFQNRASVDAKRHFGEGAQLLAQARSSNA 245
++S SS SSSSSSSS+S++S S S SS + +S + G Q L + S
Sbjct: 1131 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKK 1190
Query: 246 PNQIRHHLPR*RSLSRSPRKPSRSIRKTPRLTFS 347
P P SRSPRKP S+R + L++S
Sbjct: 1191 P-------PPGERRSRSPRKPIDSLRDSRSLSYS 1217
Score = 31.6 bits (70), Expect = 5.0
Identities = 30/126 (23%), Positives = 53/126 (41%), Gaps = 6/126 (4%)
Frame = +1
Query: 7 NPETQKKKRYGYGRETSDDARHRFTNLHDFPLHLRLPRHLRHPTAAIRQAPN------SK 168
+PE + K R ++ D+ P LPR R +++ + P+ ++
Sbjct: 124 SPEVKDKPRAAPRAQSGSDSSPE----PKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE 179
Query: 169 TEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHRARSERRRGLPSQ 348
+ P P + +AR S S P P+T+S T + + + + +AR RR S
Sbjct: 180 SSPEHPPKSRTARRGSRSS----PEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASS 235
Query: 349 SDGSRS 366
S +RS
Sbjct: 236 SPETRS 241
Score = 28.1 bits (61), Expect(2) = 0.20
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPS 155
++S SS SSSSSSSS+S++S SG S S
Sbjct: 1055 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 1084
Score = 27.7 bits (60), Expect(2) = 0.54
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPSSEFQNRASVDAKR 194
++S SS SSSSSSSS+S+ S S S S + V KR
Sbjct: 1059 SSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKR 1101
Score = 27.3 bits (59), Expect(2) = 0.42
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 69 TSVYKSS*FSSSSSSSSASTASHSGYSPSSE 161
+S SS SSSSSSSS+S++S S S SS+
Sbjct: 1055 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 1085
Score = 26.9 bits (58), Expect(2) = 0.20
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +1
Query: 133 PTAAIRQAPNSKTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHR 312
PT A ++A P TP+ R+ SSS + + S+++S + + + + S
Sbjct: 1105 PTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1164
Query: 313 ARSERRRGLPSQ 348
+ S P++
Sbjct: 1165 SSSSSSSPSPAK 1176
Score = 26.6 bits (57), Expect(2) = 0.42
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +1
Query: 133 PTAAIRQAPNSKTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHR 312
PT A R+ +S + +S+ S++S+ + SSS + + S+++S + + + A+ +
Sbjct: 1121 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQ 1180
Query: 313 A 315
A
Sbjct: 1181 A 1181
Score = 25.8 bits (55), Expect(2) = 0.54
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +1
Query: 166 KTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARESHRARSERRRGLPS 345
K P+ TP+ A +P P + RS+++S + + + + S + S S
Sbjct: 1100 KRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1159
Query: 346 QSDGSRST 369
S S S+
Sbjct: 1160 SSSSSSSS 1167
>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
Length = 1754
Score = 45.1 bits (105), Expect = 4e-04
Identities = 35/94 (37%), Positives = 48/94 (50%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPSSEFQNRASVDAKRHFGEGAQLLAQARSSNA 245
++S SS SSSSSSSS+S++S S S SS + +S + G Q L + S
Sbjct: 1613 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKK 1672
Query: 246 PNQIRHHLPR*RSLSRSPRKPSRSIRKTPRLTFS 347
P P SRSPRKP S+R + L++S
Sbjct: 1673 P-------PPGERRSRSPRKPIDSLRDSRSLSYS 1699
Score = 31.2 bits (69), Expect = 6.5
Identities = 26/77 (33%), Positives = 39/77 (49%)
Frame = +3
Query: 96 SSSSSSSSASTASHSGYSPSSEFQNRASVDAKRHFGEGAQLLAQARSSNAPNQIRHHLPR 275
SSSSSSSS+S++S S S SS +S D+ EG+ L AQ + +P+
Sbjct: 1538 SSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS-----EGSSLPAQPEVALKRVPSPTPVPK 1592
Query: 276 *RSLSRSPRKPSRSIRK 326
P++P+ + RK
Sbjct: 1593 EAIREGRPQEPTPAKRK 1609
Score = 28.1 bits (61), Expect(2) = 0.19
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 66 ATSVYKSS*FSSSSSSSSASTASHSGYSPS 155
++S SS SSSSSSSS+S++S SG S S
Sbjct: 1537 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 1566
Score = 26.9 bits (58), Expect(2) = 0.19
Identities = 15/63 (23%), Positives = 35/63 (54%)
Frame = +1
Query: 127 RHPTAAIRQAPNSKTEPASTPSATSARALSSSHKPDPPTPRTRSATTSLAKEALAEARES 306
+ PT A R+ +S + +S+ S++S+ + SSS + + S+++S + + + A+
Sbjct: 1601 QEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 1660
Query: 307 HRA 315
+A
Sbjct: 1661 PQA 1663
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,517,515
Number of Sequences: 1393205
Number of extensions: 11441784
Number of successful extensions: 178924
Number of sequences better than 10.0: 1187
Number of HSP's better than 10.0 without gapping: 85145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144778
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
