Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009299A_C01 KMC009299A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175789.1| hypothetical protein; protein id: At1g53860.1 [... 121 2e-40
gb|AAN40027.1| hypothetical protein [Zea mays] 116 2e-32
ref|NP_027421.1| expressed protein; protein id: At2g02170.1, sup... 88 8e-17
ref|NP_174322.1| hypothetical protein; protein id: At1g30320.1 [... 75 5e-13
gb|AAO15296.1| Unknown protein [Oryza sativa (japonica cultivar-... 70 1e-11
>ref|NP_175789.1| hypothetical protein; protein id: At1g53860.1 [Arabidopsis
thaliana] gi|25405667|pir||G96578 hypothetical protein
T18A20.9 [imported] - Arabidopsis thaliana
gi|6056395|gb|AAF02859.1|AC009324_8 Hypothetical protein
[Arabidopsis thaliana]
Length = 438
Score = 121 bits (303), Expect(2) = 2e-40
Identities = 63/100 (63%), Positives = 81/100 (81%), Gaps = 4/100 (4%)
Frame = -3
Query: 541 VPSNWSSGEEEDKEMSKSLRH----NASQKADSDCIAATWEEEEKTKCCLRYQREEAKIQ 374
V S+W+S EEE++E+SKSLRH + +++ S+ A W++E+ ++YQREEAKIQ
Sbjct: 290 VTSHWNSREEEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDK---IKYQREEAKIQ 346
Query: 373 AWINLQNAKAEAQSRKLEVKIQKMRSNLEEKLMKRMTVVH 254
AW+NL+NAKAEAQSRKLEVKIQKMRSNLEEKLMKRM +VH
Sbjct: 347 AWVNLENAKAEAQSRKLEVKIQKMRSNLEEKLMKRMDMVH 386
Score = 66.2 bits (160), Expect(2) = 2e-40
Identities = 28/52 (53%), Positives = 37/52 (70%)
Frame = -1
Query: 252 RKAEEWRETAREKHMEQMQKAAQHAKKMVHGHNSQFFRHSSCGCFPCNNNHH 97
R+AE+WR TAR++H+EQMQKAA+ A+K+ + SSCGC PCNN H
Sbjct: 387 RRAEDWRATARQQHVEQMQKAAETARKLTNRRGYLVTGRSSCGCLPCNNTCH 438
>gb|AAN40027.1| hypothetical protein [Zea mays]
Length = 607
Score = 116 bits (291), Expect(2) = 2e-32
Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 9/100 (9%)
Frame = -3
Query: 529 WSSGEEE---DKEMSKSLRHNASQKADSDCIA------ATWEEEEKTKCCLRYQREEAKI 377
WSS EEE D+++SKSLRH + + C W+++++ K C+RYQREEAKI
Sbjct: 284 WSSKEEEEDDDEDVSKSLRHFEATVGGTACDRRGGGGDCRWDDDDRAKSCIRYQREEAKI 343
Query: 376 QAWINLQNAKAEAQSRKLEVKIQKMRSNLEEKLMKRMTVV 257
QAW+NL++AKAEAQSRKLEVKIQKMR NLEEKLM+RMT V
Sbjct: 344 QAWVNLESAKAEAQSRKLEVKIQKMRCNLEEKLMRRMTTV 383
Score = 44.3 bits (103), Expect(2) = 2e-32
Identities = 23/64 (35%), Positives = 33/64 (50%), Gaps = 14/64 (21%)
Frame = -1
Query: 252 RKAEEWRETAREKHMEQMQKAAQH-----------AKKMVHGHNSQFFRHS---SCGCFP 115
R+A EWR TAR +H++Q+++AA H A H H+ S SC CFP
Sbjct: 385 RRAGEWRATARAQHLQQLRRAAAHGDGDGRRLRATATSTAHHHHRHLPGSSDAPSCACFP 444
Query: 114 CNNN 103
C+ +
Sbjct: 445 CSTS 448
>ref|NP_027421.1| expressed protein; protein id: At2g02170.1, supported by cDNA:
gi_14326557 [Arabidopsis thaliana]
gi|25410968|pir||G84433 hypothetical protein At2g02170
[imported] - Arabidopsis thaliana
gi|4038035|gb|AAC97217.1| expressed protein [Arabidopsis
thaliana] gi|14326558|gb|AAK60323.1|AF385733_1
At2g02170/F5O4.6 [Arabidopsis thaliana]
gi|27764932|gb|AAO23587.1| At2g02170/F5O4.6 [Arabidopsis
thaliana]
Length = 486
Score = 87.8 bits (216), Expect = 8e-17
Identities = 42/94 (44%), Positives = 64/94 (67%), Gaps = 3/94 (3%)
Frame = -3
Query: 529 WSSGEEEDKEMSKSLRHNAS---QKADSDCIAATWEEEEKTKCCLRYQREEAKIQAWINL 359
W+S E+EDK+ S SL+ AS K+ S+ A WEE EK K R++REE KIQAW N
Sbjct: 346 WASKEDEDKDASTSLKTKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENH 405
Query: 358 QNAKAEAQSRKLEVKIQKMRSNLEEKLMKRMTVV 257
Q AK+EA+ +K EVK+++++ +++LMK++ +
Sbjct: 406 QKAKSEAEMKKTEVKVERIKGRAQDRLMKKLATI 439
>ref|NP_174322.1| hypothetical protein; protein id: At1g30320.1 [Arabidopsis
thaliana] gi|25518593|pir||E86427 hypothetical protein
T4K22.7 - Arabidopsis thaliana
gi|12322121|gb|AAG51095.1|AC025295_3 hypothetical
protein [Arabidopsis thaliana]
gi|26452636|dbj|BAC43401.1| unknown protein [Arabidopsis
thaliana]
Length = 509
Score = 75.1 bits (183), Expect = 5e-13
Identities = 36/90 (40%), Positives = 59/90 (65%)
Frame = -3
Query: 529 WSSGEEEDKEMSKSLRHNASQKADSDCIAATWEEEEKTKCCLRYQREEAKIQAWINLQNA 350
W+S EEE+ + + A QK + + A WEE EK+K RY+REE +IQAW + + A
Sbjct: 372 WASKEEEENKKNNGDAEEA-QKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKA 430
Query: 349 KAEAQSRKLEVKIQKMRSNLEEKLMKRMTV 260
K EA+ R++E K+++M++ E K+MK++ +
Sbjct: 431 KLEAEMRRIEAKVEQMKAEAEAKIMKKIAL 460
>gb|AAO15296.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 426
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/88 (38%), Positives = 54/88 (60%)
Frame = -3
Query: 529 WSSGEEEDKEMSKSLRHNASQKADSDCIAATWEEEEKTKCCLRYQREEAKIQAWINLQNA 350
W+S EE+ ++ + + + D + AA WEE EK K R+QREE KIQAW N Q A
Sbjct: 290 WASKEEKSTTSFANVITDKAVEIDREARAADWEEAEKAKYLARFQREEVKIQAWENHQKA 349
Query: 349 KAEAQSRKLEVKIQKMRSNLEEKLMKRM 266
K EA+ +++E KI+ R+ +++L ++
Sbjct: 350 KIEAEMKRMEAKIEIKRAREQDRLSSKL 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,144,837
Number of Sequences: 1393205
Number of extensions: 9263042
Number of successful extensions: 28970
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 27094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28860
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
