Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009298A_C01 KMC009298A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43699.1| unknown protein [Arabidopsis thaliana] gi|289508... 177 1e-43
pir||T04238 hypothetical protein F14M19.120 - Arabidopsis thalia... 177 1e-43
ref|NP_567731.1| putative protein; protein id: At4g25840.1, supp... 177 1e-43
gb|AAM67188.1| GS1-like protein [Arabidopsis thaliana] 176 2e-43
ref|NP_568858.1| GS1-like protein; protein id: At5g57440.1, supp... 174 6e-43
>dbj|BAC43699.1| unknown protein [Arabidopsis thaliana] gi|28950809|gb|AAO63328.1|
At4g25840 [Arabidopsis thaliana]
Length = 249
Score = 177 bits (448), Expect = 1e-43
Identities = 87/112 (77%), Positives = 97/112 (85%)
Frame = -2
Query: 542 FELKTQRHGELFSLMHHVVVGDDPEVKHGKPSPDVFLAAAKRFEGGPVDPCKVLVFEDAP 363
F+LKTQRH ELFSLMHHVV GDDPEVK GKP+PD FLAA++RFE GPVDP KVLVFEDAP
Sbjct: 136 FDLKTQRHRELFSLMHHVVRGDDPEVKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDAP 195
Query: 362 AGVLAAKNAGMSVVMVPDARLDKSLHAEADQVLNSLLDFNPCEWGLPPFEDN 207
+GV AAKNAGM+V+MVPD+RLDKS ADQVL SLLDF P EWGLP F+D+
Sbjct: 196 SGVQAAKNAGMNVIMVPDSRLDKSYCNVADQVLASLLDFKPEEWGLPSFQDS 247
>pir||T04238 hypothetical protein F14M19.120 - Arabidopsis thaliana
gi|4539302|emb|CAB39605.1| putative protein [Arabidopsis
thaliana] gi|7269435|emb|CAB79439.1| putative protein
[Arabidopsis thaliana]
Length = 221
Score = 177 bits (448), Expect = 1e-43
Identities = 87/112 (77%), Positives = 97/112 (85%)
Frame = -2
Query: 542 FELKTQRHGELFSLMHHVVVGDDPEVKHGKPSPDVFLAAAKRFEGGPVDPCKVLVFEDAP 363
F+LKTQRH ELFSLMHHVV GDDPEVK GKP+PD FLAA++RFE GPVDP KVLVFEDAP
Sbjct: 108 FDLKTQRHRELFSLMHHVVRGDDPEVKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDAP 167
Query: 362 AGVLAAKNAGMSVVMVPDARLDKSLHAEADQVLNSLLDFNPCEWGLPPFEDN 207
+GV AAKNAGM+V+MVPD+RLDKS ADQVL SLLDF P EWGLP F+D+
Sbjct: 168 SGVQAAKNAGMNVIMVPDSRLDKSYCNVADQVLASLLDFKPEEWGLPSFQDS 219
>ref|NP_567731.1| putative protein; protein id: At4g25840.1, supported by cDNA:
98650. [Arabidopsis thaliana]
Length = 298
Score = 177 bits (448), Expect = 1e-43
Identities = 87/112 (77%), Positives = 97/112 (85%)
Frame = -2
Query: 542 FELKTQRHGELFSLMHHVVVGDDPEVKHGKPSPDVFLAAAKRFEGGPVDPCKVLVFEDAP 363
F+LKTQRH ELFSLMHHVV GDDPEVK GKP+PD FLAA++RFE GPVDP KVLVFEDAP
Sbjct: 185 FDLKTQRHRELFSLMHHVVRGDDPEVKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDAP 244
Query: 362 AGVLAAKNAGMSVVMVPDARLDKSLHAEADQVLNSLLDFNPCEWGLPPFEDN 207
+GV AAKNAGM+V+MVPD+RLDKS ADQVL SLLDF P EWGLP F+D+
Sbjct: 245 SGVQAAKNAGMNVIMVPDSRLDKSYCNVADQVLASLLDFKPEEWGLPSFQDS 296
>gb|AAM67188.1| GS1-like protein [Arabidopsis thaliana]
Length = 298
Score = 176 bits (446), Expect = 2e-43
Identities = 87/112 (77%), Positives = 96/112 (85%)
Frame = -2
Query: 542 FELKTQRHGELFSLMHHVVVGDDPEVKHGKPSPDVFLAAAKRFEGGPVDPCKVLVFEDAP 363
F+LKTQRH ELFSLMHHVV GDDPEVK GKP+PD FLAA++RFE GPVDP KVLVFEDAP
Sbjct: 185 FDLKTQRHRELFSLMHHVVRGDDPEVKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDAP 244
Query: 362 AGVLAAKNAGMSVVMVPDARLDKSLHAEADQVLNSLLDFNPCEWGLPPFEDN 207
+GV AAKNAGM+V+MVPD RLDKS ADQVL SLLDF P EWGLP F+D+
Sbjct: 245 SGVQAAKNAGMNVIMVPDPRLDKSYCNVADQVLASLLDFKPEEWGLPSFQDS 296
>ref|NP_568858.1| GS1-like protein; protein id: At5g57440.1, supported by cDNA:
110980., supported by cDNA: gi_17381021, supported by
cDNA: gi_21281160 [Arabidopsis thaliana]
gi|17381022|gb|AAL36323.1| putative GS1 protein
[Arabidopsis thaliana] gi|21281161|gb|AAM45079.1|
putative GS1 protein [Arabidopsis thaliana]
gi|21536767|gb|AAM61099.1| GS1-like protein [Arabidopsis
thaliana]
Length = 240
Score = 174 bits (441), Expect = 6e-43
Identities = 85/112 (75%), Positives = 96/112 (84%)
Frame = -2
Query: 542 FELKTQRHGELFSLMHHVVVGDDPEVKHGKPSPDVFLAAAKRFEGGPVDPCKVLVFEDAP 363
++LKTQRH ELFSLMHHVV GDDPEVK GKP+PD FLAAA+RF+ GPVD KVLVFEDAP
Sbjct: 128 YDLKTQRHRELFSLMHHVVRGDDPEVKQGKPAPDGFLAAARRFKDGPVDSQKVLVFEDAP 187
Query: 362 AGVLAAKNAGMSVVMVPDARLDKSLHAEADQVLNSLLDFNPCEWGLPPFEDN 207
+GVLAAKNAGM+VVMVPD RLD S ADQ++ SL+DF P EWGLPPFED+
Sbjct: 188 SGVLAAKNAGMNVVMVPDPRLDISHQDVADQIITSLVDFKPEEWGLPPFEDS 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,972,571
Number of Sequences: 1393205
Number of extensions: 9916133
Number of successful extensions: 31392
Number of sequences better than 10.0: 358
Number of HSP's better than 10.0 without gapping: 29518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31080
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
