Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009297A_C01 KMC009297A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum] 346 2e-94
sp|Q40465|IF4V_TOBAC Eukaryotic initiation factor 4A-11 (eIF-4A-... 342 3e-93
pir||S52018 translation initiation factor eIF-4A.11 - common tob... 340 8e-93
sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A-13 (EIF-4A-... 339 2e-92
pir||S52022 translation initiation factor eIF-4A.13 - common tob... 339 2e-92
>gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
Length = 413
Score = 346 bits (887), Expect = 2e-94
Identities = 171/180 (95%), Positives = 178/180 (98%)
Frame = +2
Query: 128 MAGLAPEGSQFDAKHYDTKMSELLTTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGF 307
MAG+APEGSQFDAK +DTKM+ELLTTEGQDF+T Y+EVY+SFDAMGLQENLLRGIYAYGF
Sbjct: 1 MAGVAPEGSQFDAKQFDTKMNELLTTEGQDFYTFYEEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 308 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTREL 487
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYS+TECQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTREL 120
Query: 488 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 667
AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
>sp|Q40465|IF4V_TOBAC Eukaryotic initiation factor 4A-11 (eIF-4A-11) (eIF4A-11)
gi|485987|emb|CAA55737.1| NeIF-4A11 [Nicotiana tabacum]
Length = 413
Score = 342 bits (877), Expect = 3e-93
Identities = 171/180 (95%), Positives = 174/180 (96%)
Frame = +2
Query: 128 MAGLAPEGSQFDAKHYDTKMSELLTTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGF 307
MAGLAPEGSQFDA+ YD KM+ELL TE Q+FFTSYDEVYESFDAMGLQENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYESFDAMGLQENLLRGIYAYGF 60
Query: 308 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTREL 487
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSL ECQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTREL 120
Query: 488 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 667
AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
>pir||S52018 translation initiation factor eIF-4A.11 - common tobacco
Length = 413
Score = 340 bits (873), Expect = 8e-93
Identities = 169/180 (93%), Positives = 174/180 (95%)
Frame = +2
Query: 128 MAGLAPEGSQFDAKHYDTKMSELLTTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGF 307
MAGLAPEGSQFDA+ YD KM+ELL TE Q+FFTSYDEVY+SFDAMGLQENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 308 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTREL 487
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDYSL ECQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 488 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 667
AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
>sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A-13 (EIF-4A-13)
gi|485941|emb|CAA55741.1| NeIF-4A13 [Nicotiana tabacum]
Length = 355
Score = 339 bits (870), Expect = 2e-92
Identities = 168/180 (93%), Positives = 174/180 (96%)
Frame = +2
Query: 128 MAGLAPEGSQFDAKHYDTKMSELLTTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGF 307
MAGLAPEGSQFDA+ YD KM+ELL TE ++FFTSYDEVY+SFDAMGLQENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 308 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTREL 487
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDYSL ECQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 488 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 667
AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
>pir||S52022 translation initiation factor eIF-4A.13 - common tobacco
(fragment)
Length = 355
Score = 339 bits (870), Expect = 2e-92
Identities = 168/180 (93%), Positives = 174/180 (96%)
Frame = +2
Query: 128 MAGLAPEGSQFDAKHYDTKMSELLTTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGF 307
MAGLAPEGSQFDA+ YD KM+ELL TE ++FFTSYDEVY+SFDAMGLQENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 308 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTREL 487
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDYSL ECQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 488 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 667
AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,104,845
Number of Sequences: 1393205
Number of extensions: 12329535
Number of successful extensions: 39747
Number of sequences better than 10.0: 1390
Number of HSP's better than 10.0 without gapping: 36768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38467
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
