Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009260A_C01 KMC009260A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P02300|H3_PEA Histone H3 gi|81849|pir||S04520 histone H3 (clo... 263 1e-69
ref|NP_189372.1| histone H3, putative; protein id: At3g27360.1, ... 262 2e-69
gb|AAO06264.1| histone protein Hist2h3c1 [Mus musculus] 262 2e-69
gb|AAA32655.1| histone H3 (H3-1.1) 262 3e-69
gb|EAA09847.1| agCP10831 [Anopheles gambiae str. PEST] 261 4e-69
>sp|P02300|H3_PEA Histone H3 gi|81849|pir||S04520 histone H3 (clone pH3c-1) - alfalfa
gi|82609|pir||A26014 histone H3 - wheat
gi|19607|emb|CAA31964.1| histone H3 (AA 1-136) [Medicago
sativa] gi|19609|emb|CAA31965.1| histone H3 (AA 1-136)
[Medicago sativa] gi|21797|emb|CAA25451.1| H3 histone
[Triticum aestivum] gi|488565|gb|AAB49545.1| histone
H3.1 gi|2565419|gb|AAB81995.1| histone H3 [Onobrychis
viciifolia]
Length = 136
Score = 263 bits (673), Expect = 1e-69
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = -3
Query: 577 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 398
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 397 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 218
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 217 MPKDIQLARRIRGERA 170
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_189372.1| histone H3, putative; protein id: At3g27360.1, supported by cDNA:
gi_14335141, supported by cDNA: gi_18655352 [Arabidopsis
thaliana] gi|15238433|ref|NP_201339.1| histone H3
(sp|P05203); protein id: At5g65360.1, supported by cDNA:
gi_13926210, supported by cDNA: gi_14532559, supported
by cDNA: gi_19548060 [Arabidopsis thaliana]
gi|18390992|ref|NP_563838.1| Expressed protein; protein
id: At1g09200.1, supported by cDNA: 10388. [Arabidopsis
thaliana] gi|18416261|ref|NP_568227.1| histone H3 - like
protein; protein id: At5g10390.1 [Arabidopsis thaliana]
gi|18416264|ref|NP_568228.1| histone H3 - like protein;
protein id: At5g10400.1 [Arabidopsis thaliana]
gi|122085|sp|P05203|H3_MAIZE Histone H3
gi|27805477|sp|P59226|H3_ARATH Histone H3
gi|81641|pir||S06250 histone H3 [similarity] -
Arabidopsis thaliana gi|82482|pir||S04099 histone H3
(variant H3R-21) - rice gi|1362194|pir||S57626 histone
H3 - maize gi|20251|emb|CAA31969.1| histone H3 (AA
1-136) [Oryza sativa] gi|20253|emb|CAA31970.1| histone
H3 (AA 1-136) [Oryza sativa] gi|168493|gb|AAA33471.1|
histone H3 (H3C3) gi|168495|gb|AAA33472.1| histone H3
gi|168497|gb|AAA33473.1| histone H3
gi|168506|gb|AAA66265.1| histone H3
gi|169655|gb|AAA33852.1| histone H3
gi|169657|gb|AAA33853.1| histone H3
gi|169659|gb|AAA33854.1| histone H3
gi|387565|gb|AAA32808.1| histone H3
gi|387567|gb|AAA32809.1| histone H3
gi|886738|emb|CAA59111.1| histone 3 [Zea mays]
gi|1040764|gb|AAA79889.1| histone H3
gi|1314779|gb|AAB67837.1| histone H3 homolog [Brassica
napus] gi|1531754|emb|CAA57811.1| Histone H3 [Asparagus
officinalis] gi|1667592|gb|AAB18816.1| histone 3 [Oryza
sativa] gi|3249101|gb|AAC24084.1| Match to histone H3
gene gb|M17131 and gb|M35387 from A. thaliana. ESTs
gb|H76511 gb|H76255, gb|AA712452, gb|N65260 and
gb|T42306 come from this gene. [Arabidopsis thaliana]
gi|5295939|dbj|BAA81840.1| ESTs
C74053(E30274),D15300(C0425),AU030134(E50667) correspond
to a region of the predicted gene.~Similar to Asparagus
officinalis mRNA for Histone H3.(X82414) [Oryza sativa
(japonica cultivar-group)] gi|5295940|dbj|BAA81841.1|
ESTs C74053(E30274),D15300(C0425),AU030134(E50667)
correspond to a region of the predicted gene.~Similar to
Asparagus officinalis mRNA for Histone H3.(X82414)
[Oryza sativa (japonica cultivar-group)]
gi|7595794|gb|AAF64452.1|AF239930_1 histone H3
[Euphorbia esula] gi|7671463|emb|CAB89403.1| histone
H3-like protein [Arabidopsis thaliana]
gi|7671464|emb|CAB89404.1| histone H3-like protein
[Arabidopsis thaliana] gi|7939509|dbj|BAA95712.1|
histone H3-like protein [Arabidopsis thaliana]
gi|9759616|dbj|BAB11558.1| histone H3 [Arabidopsis
thaliana] gi|13926211|gb|AAK49583.1|AF370577_1 histone
H3 [Arabidopsis thaliana] gi|14335142|gb|AAK59851.1|
AT3g27360/K1G2_6 [Arabidopsis thaliana]
gi|14532560|gb|AAK64008.1| AT5g65360/MNA5_9 [Arabidopsis
thaliana] gi|18655353|gb|AAL76132.1| AT3g27360/K1G2_6
[Arabidopsis thaliana] gi|19548061|gb|AAL87394.1|
AT5g65360/MNA5_9 [Arabidopsis thaliana]
gi|21536571|gb|AAM60903.1| histone H3-like protein
[Arabidopsis thaliana] gi|21644654|dbj|BAC01212.1|
putative histone H3 [Oryza sativa (japonica
cultivar-group)] gi|22324934|gb|AAM95675.1| histone H3
[Orobanche cumana] gi|24060183|dbj|BAC21299.1| histone
H3 [Oryza sativa (japonica cultivar-group)]
gi|24060188|dbj|BAC21304.1| histone H3 [Oryza sativa
(japonica cultivar-group)] gi|24060189|dbj|BAC21305.1|
histone H3 [Oryza sativa (japonica cultivar-group)]
gi|26449416|dbj|BAC41835.1| putative histone H3
[Arabidopsis thaliana] gi|27529854|dbj|BAC53942.1| H3
histone [Nicotiana tabacum] gi|27764990|gb|AAO23616.1|
At5g10400 [Arabidopsis thaliana]
gi|27808628|gb|AAO24594.1| At1g09200 [Arabidopsis
thaliana] gi|28973783|gb|AAO64207.1| putative histone H3
[Arabidopsis thaliana] gi|225459|prf||1303352A histone
H3 gi|225839|prf||1314298B histone H3
Length = 136
Score = 262 bits (670), Expect = 2e-69
Identities = 135/136 (99%), Positives = 136/136 (99%)
Frame = -3
Query: 577 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 398
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 397 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 218
LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 217 MPKDIQLARRIRGERA 170
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gb|AAO06264.1| histone protein Hist2h3c1 [Mus musculus]
Length = 181
Score = 262 bits (670), Expect = 2e-69
Identities = 135/141 (95%), Positives = 138/141 (97%)
Frame = -3
Query: 592 SSPFPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKY 413
SS F MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+Y
Sbjct: 41 SSVFAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRY 100
Query: 412 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHA 233
QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV ALQEA+EAYLVGLFEDTNLCAIHA
Sbjct: 101 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHA 160
Query: 232 KRVTIMPKDIQLARRIRGERA 170
KRVTIMPKDIQLARRIRGERA
Sbjct: 161 KRVTIMPKDIQLARRIRGERA 181
>gb|AAA32655.1| histone H3 (H3-1.1)
Length = 136
Score = 262 bits (669), Expect = 3e-69
Identities = 135/136 (99%), Positives = 135/136 (99%)
Frame = -3
Query: 577 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 398
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 397 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 218
LLIRKLPFQRLVREIAQDFKTDLRFQSS VSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSVVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 217 MPKDIQLARRIRGERA 170
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gb|EAA09847.1| agCP10831 [Anopheles gambiae str. PEST]
Length = 159
Score = 261 bits (668), Expect = 4e-69
Identities = 133/146 (91%), Positives = 141/146 (96%)
Frame = -3
Query: 607 PFSPFSSPFPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR 428
P S F++ MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALR
Sbjct: 14 PDSAFAASIAMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR 73
Query: 427 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNL 248
EIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AV+ALQEA+EAYLVGLFEDTNL
Sbjct: 74 EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAVAALQEASEAYLVGLFEDTNL 133
Query: 247 CAIHAKRVTIMPKDIQLARRIRGERA 170
CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 134 CAIHAKRVTIMPKDIQLARRIRGERA 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,762,062
Number of Sequences: 1393205
Number of extensions: 15295888
Number of successful extensions: 154874
Number of sequences better than 10.0: 1687
Number of HSP's better than 10.0 without gapping: 88562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129071
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
